Strain Fitness in Shewanella oneidensis MR-1 around SO1840

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
1,928,861	+				+1.7
1,928,861	+				-1.9
1,928,869	-				-1.2
1,928,876	-				+0.8
1,928,877	-				-0.1
1,928,900	-				-0.5
1,928,923	+				-0.1
1,928,930	-				+1.1
1,929,061	-		SO1839	0.20	-0.2
1,929,069	-		SO1839	0.21	+0.1
1,929,186	-		SO1839	0.35	+0.6
1,929,248	+		SO1839	0.43	+0.8
1,929,248	+		SO1839	0.43	-2.8
1,929,278	+		SO1839	0.46	+0.7
1,929,278	+		SO1839	0.46	+0.5
1,929,279	-		SO1839	0.46	+1.2
1,929,285	-		SO1839	0.47	+0.4
1,929,286	-		SO1839	0.47	-0.1
1,929,286	-		SO1839	0.47	+0.4
1,929,314	+		SO1839	0.50	-0.8
1,929,441	+		SO1839	0.66	-1.0
1,929,477	+		SO1839	0.70	+0.2
1,929,477	+		SO1839	0.70	-0.4
1,929,498	+		SO1839	0.73	-2.9
1,929,626	+		SO1839	0.88	+0.7
1,929,641	+				-1.1
1,929,641	+				+0.5
1,929,641	+				-0.1
1,929,641	+				-3.0
1,929,650	-				-0.1
1,929,746	+				+0.2
1,929,746	+				+0.6
1,929,746	+				-0.4
1,929,746	+				+0.2
1,929,746	+				+1.6
1,929,746	+				-1.7
1,929,754	-				-1.3
1,929,754	-				-0.7
1,929,754	-				-0.1
1,929,754	-				-2.6
1,929,765	-				-1.5
1,929,781	-				-1.1
1,929,899	-				-2.3
1,929,900	+				+0.0
1,929,911	+				+0.3
1,929,916	+				+0.9
1,929,938	+				+0.3
1,929,946	-				+1.0
1,929,948	+				+0.4
1,929,948	+				-1.1
1,930,005	+		SO1840	0.14	+0.7
1,930,066	-		SO1840	0.20	-2.7
1,930,160	-		SO1840	0.28	+0.1
1,930,185	-		SO1840	0.31	+1.4
1,930,381	+		SO1840	0.49	+0.0
1,930,407	-		SO1840	0.51	+0.9
1,930,511	+		SO1840	0.61	-1.0
1,930,511	+		SO1840	0.61	+0.2
1,930,511	+		SO1840	0.61	-0.1
1,930,511	+		SO1840	0.61	+0.3
1,930,519	-		SO1840	0.62	+0.6
1,930,525	+		SO1840	0.62	-1.2
1,930,526	+		SO1840	0.62	+1.2
1,930,546	+		SO1840	0.64	-1.1
1,930,694	+		SO1840	0.78	+0.1
1,930,743	+		SO1840	0.83	-0.0
1,930,972	+		SO1841	0.16	-1.9
1,930,980	-		SO1841	0.19	-1.2
1,931,023	-		SO1841	0.34	+0.3
1,931,043	+		SO1841	0.41	+0.7
1,931,133	+		SO1841	0.72	-0.8
1,931,170	+		SO1841	0.85	+0.5
1,931,390	-				+0.6
1,931,480	+		SO1842	0.19	-1.0
1,931,480	+		SO1842	0.19	-1.3
1,931,488	-		SO1842	0.20	+0.1
1,931,488	-		SO1842	0.20	+0.2
1,931,496	+		SO1842	0.21	-1.1
1,931,513	+		SO1842	0.23	+0.4
1,931,600	-		SO1842	0.35	-0.3
1,931,607	+		SO1842	0.36	-0.7
1,931,788	+		SO1842	0.61	+0.1
1,931,811	+		SO1842	0.64	+1.0
1,931,821	+		SO1842	0.65	-0.5
1,931,872	+		SO1842	0.72	+0.3
1,931,908	+				+1.8
1,931,908	+		SO1842	0.77	-2.2
1,931,908	+		SO1842	0.77	-1.3
1,931,916	-		SO1842	0.78	-0.1
1,931,916	-		SO1842	0.78	-1.7
1,931,916	-		SO1842	0.78	-1.2