Strain Fitness in Shewanella oneidensis MR-1 around SO1401

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
1,455,246	+				-0.4
1,455,246	+				-0.5
1,455,254	-		SO1400	0.10	+0.8
1,455,268	+		SO1400	0.12	+0.5
1,455,314	-		SO1400	0.17	+0.0
1,455,365	+		SO1400	0.23	-0.7
1,455,417	-		SO1400	0.29	+0.6
1,455,483	+		SO1400	0.36	-0.0
1,455,732	+		SO1400	0.65	+0.1
1,455,862	+		SO1400	0.79	+0.2
1,455,863	+		SO1400	0.80	+0.2
1,455,863	+		SO1400	0.80	-1.2
1,455,877	+		SO1400	0.81	-0.9
1,455,885	-		SO1400	0.82	-0.0
1,455,988	-				-0.6
1,456,036	+				-0.7
1,456,099	-				-0.2
1,456,151	+				-0.5
1,456,233	+				+0.8
1,456,241	-				-0.4
1,456,265	-				-0.5
1,456,297	+				+0.7
1,456,426	-		SO1401	0.12	+0.8
1,456,426	-		SO1401	0.12	-0.5
1,456,431	-		SO1401	0.12	-1.4
1,456,610	+		SO1401	0.23	-1.7
1,456,628	-		SO1401	0.24	-0.8
1,456,654	+		SO1401	0.26	+0.2
1,456,654	+		SO1401	0.26	-0.3
1,456,654	+		SO1401	0.26	+0.9
1,456,662	-		SO1401	0.27	-1.2
1,456,764	+		SO1401	0.33	-1.3
1,456,770	-		SO1401	0.33	+0.0
1,456,773	-		SO1401	0.34	+0.4
1,456,779	+		SO1401	0.34	-0.5
1,456,796	+		SO1401	0.35	-0.7
1,456,822	+		SO1401	0.37	-1.1
1,456,869	-		SO1401	0.40	-0.1
1,456,889	+		SO1401	0.41	-0.4
1,456,894	+		SO1401	0.41	-1.1
1,456,909	+		SO1401	0.42	-0.1
1,456,912	-		SO1401	0.42	+1.4
1,456,917	-		SO1401	0.43	-2.2
1,456,930	+		SO1401	0.44	-2.4
1,456,958	+		SO1401	0.45	-2.2
1,456,966	-		SO1401	0.46	-2.1
1,457,048	+		SO1401	0.51	-1.0
1,457,107	+		SO1401	0.55	-2.1
1,457,136	-		SO1401	0.57	-2.6
1,457,136	-		SO1401	0.57	-2.5
1,457,175	+		SO1401	0.59	+0.2
1,457,196	+		SO1401	0.61	+0.4
1,457,236	-		SO1401	0.63	-2.0
1,457,333	+		SO1401	0.69	-2.0
1,457,335	+		SO1401	0.69	-0.0
1,457,379	+		SO1401	0.72	+0.1
1,457,412	+		SO1401	0.74	+0.7
1,457,474	+		SO1401	0.78	-1.2
1,457,500	+		SO1401	0.80	+0.3
1,457,611	+		SO1401	0.87	-1.7
1,457,611	+		SO1401	0.87	-0.5
1,457,611	+		SO1401	0.87	-2.4
1,457,619	-		SO1401	0.87	-1.3
1,457,852	-				+1.4
1,458,056	-		SO1402	0.26	-1.4
1,458,079	+		SO1402	0.30	+1.2
1,458,172	-		SO1402	0.43	-0.6
1,458,190	+		SO1402	0.46	+2.4
1,458,190	+		SO1402	0.46	+0.0
1,458,198	-		SO1402	0.47	-2.5
1,458,198	-		SO1402	0.47	-1.2
1,458,280	+		SO1402	0.59	-1.6
1,458,355	+		SO1402	0.70	+0.8
1,458,355	+		SO1402	0.70	-1.9
1,458,363	-		SO1402	0.72	-0.1
1,458,420	+		SO1402	0.80	-1.1
1,458,444	-		SO1402	0.83	+0.2
1,458,456	+		SO1402	0.85	-0.5
1,458,464	-		SO1402	0.86	-1.2
1,458,464	-		SO1402	0.86	-0.1
1,458,518	-				-0.8
1,458,558	+				-0.8
1,458,631	-				-0.9
1,458,704	+				+0.0
1,458,704	+				+0.5
1,458,712	-				+0.2