Experiment: Cisplatin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0752 and SO0753 are separated by 56 nucleotides SO0753 and SO0754 are separated by 110 nucleotides SO0754 and SO0755 are separated by 526 nucleotides SO0755 and aroG are separated by 49 nucleotides
SO0752: SO0752 - hypothetical protein (NCBI ptt file), at 768,765 to 768,971
SO0752
SO0753: SO0753 - hypothetical protein (NCBI ptt file), at 769,028 to 769,285
SO0753
SO0754: SO0754 - ABC transporter, ATP-binding protein (NCBI ptt file), at 769,396 to 771,186
SO0754
SO0755: SO0755 - hypothetical protein (NCBI ptt file), at 771,713 to 771,889
SO0755
SO0756: aroG - phospho-2-dehydro-3-deoxyheptonate aldolase, phe-sensitive (NCBI ptt file), at 771,939 to 772,997
aroG
Position (kb) 769
770
771
772 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 768.690 kb on - strand at 768.797 kb on + strand, within SO0752 at 768.876 kb on + strand, within SO0752 at 769.088 kb on + strand, within SO0753 at 769.135 kb on + strand, within SO0753 at 769.143 kb on - strand, within SO0753 at 769.146 kb on + strand, within SO0753 at 769.146 kb on + strand, within SO0753 at 769.148 kb on + strand, within SO0753 at 769.154 kb on - strand, within SO0753 at 769.216 kb on + strand, within SO0753 at 769.230 kb on + strand, within SO0753 at 769.258 kb on - strand, within SO0753 at 769.373 kb on - strand at 769.373 kb on - strand at 769.373 kb on - strand at 769.373 kb on - strand at 769.373 kb on - strand at 769.453 kb on + strand at 769.512 kb on - strand at 769.560 kb on - strand at 769.574 kb on + strand at 769.611 kb on + strand, within SO0754 at 769.624 kb on + strand, within SO0754 at 769.632 kb on - strand, within SO0754 at 769.645 kb on + strand, within SO0754 at 769.659 kb on - strand, within SO0754 at 769.727 kb on - strand, within SO0754 at 769.747 kb on + strand, within SO0754 at 769.747 kb on + strand, within SO0754 at 769.857 kb on - strand, within SO0754 at 769.904 kb on + strand, within SO0754 at 769.904 kb on + strand, within SO0754 at 769.904 kb on + strand, within SO0754 at 769.904 kb on + strand, within SO0754 at 769.912 kb on - strand, within SO0754 at 769.912 kb on - strand, within SO0754 at 769.912 kb on - strand, within SO0754 at 769.971 kb on - strand, within SO0754 at 770.069 kb on - strand, within SO0754 at 770.174 kb on + strand, within SO0754 at 770.182 kb on - strand, within SO0754 at 770.275 kb on - strand, within SO0754 at 770.275 kb on - strand, within SO0754 at 770.276 kb on - strand, within SO0754 at 770.309 kb on - strand, within SO0754 at 770.310 kb on + strand, within SO0754 at 770.319 kb on - strand, within SO0754 at 770.344 kb on - strand, within SO0754 at 770.452 kb on + strand, within SO0754 at 770.527 kb on + strand, within SO0754 at 770.551 kb on - strand, within SO0754 at 770.588 kb on + strand, within SO0754 at 770.601 kb on - strand, within SO0754 at 770.712 kb on + strand, within SO0754 at 770.963 kb on - strand, within SO0754 at 770.981 kb on - strand, within SO0754 at 770.990 kb on + strand, within SO0754 at 771.069 kb on + strand at 771.140 kb on + strand at 771.140 kb on + strand at 771.174 kb on + strand at 771.174 kb on + strand at 771.189 kb on + strand at 771.189 kb on + strand at 771.197 kb on - strand at 771.233 kb on + strand at 771.241 kb on - strand at 771.299 kb on + strand at 771.299 kb on + strand at 771.299 kb on + strand at 771.299 kb on + strand at 771.299 kb on + strand at 771.299 kb on + strand at 771.299 kb on + strand at 771.307 kb on - strand at 771.307 kb on - strand at 771.307 kb on - strand at 771.307 kb on - strand at 771.307 kb on - strand at 771.307 kb on - strand at 771.307 kb on - strand at 771.307 kb on - strand at 771.307 kb on - strand at 771.336 kb on - strand at 771.343 kb on + strand at 771.343 kb on + strand at 771.401 kb on - strand at 771.402 kb on - strand at 771.403 kb on + strand at 771.403 kb on + strand at 771.411 kb on - strand at 771.411 kb on - strand at 771.411 kb on - strand at 771.571 kb on - strand at 771.625 kb on - strand at 771.629 kb on + strand at 771.713 kb on + strand at 771.914 kb on - strand at 771.927 kb on + strand at 771.937 kb on + strand at 772.032 kb on - strand at 772.041 kb on + strand at 772.041 kb on + strand at 772.067 kb on + strand, within aroG at 772.074 kb on + strand, within aroG
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.004 mg/ml remove 768,690 - -2.0 768,797 + SO0752 0.15 +0.1 768,876 + SO0752 0.54 +0.5 769,088 + SO0753 0.23 -0.6 769,135 + SO0753 0.41 +0.8 769,143 - SO0753 0.45 -0.9 769,146 + SO0753 0.46 -1.6 769,146 + SO0753 0.46 +0.6 769,148 + SO0753 0.47 +0.4 769,154 - SO0753 0.49 -1.7 769,216 + SO0753 0.73 -1.5 769,230 + SO0753 0.78 -1.7 769,258 - SO0753 0.89 +0.2 769,373 - -1.8 769,373 - +0.8 769,373 - +1.6 769,373 - -1.6 769,373 - -0.1 769,453 + +0.6 769,512 - -1.8 769,560 - -1.1 769,574 + +0.3 769,611 + SO0754 0.12 +1.1 769,624 + SO0754 0.13 -0.7 769,632 - SO0754 0.13 +0.3 769,645 + SO0754 0.14 +1.1 769,659 - SO0754 0.15 +0.7 769,727 - SO0754 0.18 -1.9 769,747 + SO0754 0.20 -1.0 769,747 + SO0754 0.20 +0.2 769,857 - SO0754 0.26 -0.0 769,904 + SO0754 0.28 -0.2 769,904 + SO0754 0.28 -0.2 769,904 + SO0754 0.28 -3.4 769,904 + SO0754 0.28 -0.8 769,912 - SO0754 0.29 +0.6 769,912 - SO0754 0.29 -0.1 769,912 - SO0754 0.29 +0.1 769,971 - SO0754 0.32 -0.6 770,069 - SO0754 0.38 +1.2 770,174 + SO0754 0.43 -1.8 770,182 - SO0754 0.44 +1.3 770,275 - SO0754 0.49 -0.7 770,275 - SO0754 0.49 -0.6 770,276 - SO0754 0.49 -0.8 770,309 - SO0754 0.51 +0.5 770,310 + SO0754 0.51 +0.6 770,319 - SO0754 0.52 -1.4 770,344 - SO0754 0.53 -1.3 770,452 + SO0754 0.59 -0.2 770,527 + SO0754 0.63 -0.9 770,551 - SO0754 0.64 -1.6 770,588 + SO0754 0.67 -1.9 770,601 - SO0754 0.67 -0.8 770,712 + SO0754 0.73 -1.2 770,963 - SO0754 0.87 -0.7 770,981 - SO0754 0.88 -0.8 770,990 + SO0754 0.89 +0.4 771,069 + +0.8 771,140 + +0.2 771,140 + -0.1 771,174 + +0.6 771,174 + -1.6 771,189 + +0.1 771,189 + +0.2 771,197 - +0.5 771,233 + -0.5 771,241 - -0.8 771,299 + +0.1 771,299 + +0.5 771,299 + +0.3 771,299 + -0.3 771,299 + -0.6 771,299 + +0.7 771,299 + +0.1 771,307 - +0.3 771,307 - +0.3 771,307 - -0.9 771,307 - +0.2 771,307 - -2.3 771,307 - +0.3 771,307 - -0.3 771,307 - +0.5 771,307 - -0.6 771,336 - +0.4 771,343 + -2.3 771,343 + +0.6 771,401 - +0.3 771,402 - -0.9 771,403 + -2.4 771,403 + +0.2 771,411 - +1.1 771,411 - -1.1 771,411 - +1.1 771,571 - -2.3 771,625 - -2.3 771,629 + -1.6 771,713 + +0.2 771,914 - -1.1 771,927 + -1.0 771,937 + -1.1 772,032 - -0.3 772,041 + -1.8 772,041 + +0.3 772,067 + aroG SO0756 0.12 +0.0 772,074 + aroG SO0756 0.13 +1.1
Or see this region's nucleotide sequence