Experiment: Cisplatin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0744 and SO0745 are separated by 215 nucleotides SO0745 and SO0746 are separated by 6 nucleotides SO0746 and fpr are separated by 65 nucleotides fpr and SO0748 are separated by 122 nucleotides
SO0744: SO0744 - iron(III) ABC transporter, periplasmic iron(III)-binding protein (NCBI ptt file), at 762,286 to 763,293
SO0744
SO0745: SO0745 - hypothetical protein (NCBI ptt file), at 763,509 to 763,928
SO0745
SO0746: SO0746 - glutathione S-transferase family protein (NCBI ptt file), at 763,935 to 764,531
SO0746
SO0747: fpr - ferredoxin--NADP reductase (NCBI ptt file), at 764,597 to 765,346
fpr
SO0748: SO0748 - hypothetical protein (NCBI ptt file), at 765,469 to 766,146
SO0748
Position (kb) 763
764
765 Strain fitness (log2 ratio) -2
-1
0
1
2 at 762.985 kb on - strand, within SO0744 at 763.015 kb on + strand, within SO0744 at 763.179 kb on - strand, within SO0744 at 763.272 kb on - strand at 763.319 kb on + strand at 763.343 kb on - strand at 763.384 kb on - strand at 763.406 kb on - strand at 763.531 kb on + strand at 763.545 kb on - strand at 763.626 kb on + strand, within SO0745 at 763.634 kb on - strand, within SO0745 at 763.634 kb on - strand, within SO0745 at 763.636 kb on - strand, within SO0745 at 763.649 kb on - strand, within SO0745 at 763.698 kb on + strand, within SO0745 at 763.781 kb on - strand, within SO0745 at 763.811 kb on + strand, within SO0745 at 763.811 kb on + strand, within SO0745 at 763.898 kb on + strand at 763.906 kb on - strand at 763.932 kb on + strand at 763.940 kb on - strand at 763.979 kb on + strand at 764.067 kb on + strand, within SO0746 at 764.075 kb on - strand, within SO0746 at 764.236 kb on - strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.279 kb on - strand, within SO0746 at 764.279 kb on - strand, within SO0746 at 764.279 kb on - strand, within SO0746 at 764.279 kb on - strand, within SO0746 at 764.404 kb on - strand, within SO0746 at 764.416 kb on + strand, within SO0746 at 764.437 kb on + strand, within SO0746 at 764.496 kb on + strand at 764.497 kb on + strand at 764.497 kb on + strand at 764.505 kb on - strand at 764.510 kb on - strand at 764.682 kb on + strand, within fpr at 764.716 kb on + strand, within fpr at 764.778 kb on - strand, within fpr at 764.829 kb on + strand, within fpr at 764.829 kb on + strand, within fpr at 764.837 kb on - strand, within fpr at 764.897 kb on + strand, within fpr at 764.897 kb on + strand, within fpr at 764.899 kb on - strand, within fpr at 764.905 kb on - strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.924 kb on - strand, within fpr at 764.924 kb on - strand, within fpr at 764.953 kb on + strand, within fpr at 764.953 kb on + strand, within fpr at 764.999 kb on - strand, within fpr at 765.036 kb on + strand, within fpr at 765.044 kb on - strand, within fpr at 765.044 kb on - strand, within fpr at 765.044 kb on - strand, within fpr at 765.044 kb on - strand, within fpr at 765.065 kb on - strand, within fpr at 765.065 kb on - strand, within fpr at 765.065 kb on - strand, within fpr at 765.065 kb on - strand, within fpr at 765.173 kb on - strand, within fpr at 765.202 kb on - strand, within fpr at 765.238 kb on + strand, within fpr at 765.383 kb on + strand at 765.426 kb on + strand at 765.453 kb on + strand at 765.475 kb on - strand at 765.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.004 mg/ml remove 762,985 - SO0744 0.69 -1.0 763,015 + SO0744 0.72 -0.3 763,179 - SO0744 0.89 -1.0 763,272 - -0.7 763,319 + -1.3 763,343 - -1.7 763,384 - -0.4 763,406 - +0.4 763,531 + +1.1 763,545 - -0.6 763,626 + SO0745 0.28 +0.2 763,634 - SO0745 0.30 -0.8 763,634 - SO0745 0.30 -0.6 763,636 - SO0745 0.30 +0.4 763,649 - SO0745 0.33 -0.7 763,698 + SO0745 0.45 -0.0 763,781 - SO0745 0.65 -0.3 763,811 + SO0745 0.72 -0.2 763,811 + SO0745 0.72 -0.7 763,898 + -1.3 763,906 - +0.5 763,932 + +1.4 763,940 - +0.7 763,979 + -0.1 764,067 + SO0746 0.22 +0.7 764,075 - SO0746 0.23 +1.2 764,236 - SO0746 0.50 -1.0 764,271 + SO0746 0.56 -0.0 764,271 + SO0746 0.56 +0.2 764,271 + SO0746 0.56 +0.7 764,271 + SO0746 0.56 -0.8 764,271 + SO0746 0.56 +0.8 764,271 + SO0746 0.56 +0.8 764,279 - SO0746 0.58 -0.2 764,279 - SO0746 0.58 +0.7 764,279 - SO0746 0.58 -1.2 764,279 - SO0746 0.58 -1.7 764,404 - SO0746 0.79 -0.3 764,416 + SO0746 0.81 +0.3 764,437 + SO0746 0.84 +0.0 764,496 + +0.4 764,497 + -1.7 764,497 + +1.8 764,505 - -0.7 764,510 - -0.3 764,682 + fpr SO0747 0.11 -1.4 764,716 + fpr SO0747 0.16 -0.8 764,778 - fpr SO0747 0.24 -0.2 764,829 + fpr SO0747 0.31 -0.7 764,829 + fpr SO0747 0.31 -0.1 764,837 - fpr SO0747 0.32 -2.7 764,897 + fpr SO0747 0.40 +1.3 764,897 + fpr SO0747 0.40 -1.2 764,899 - fpr SO0747 0.40 +0.8 764,905 - fpr SO0747 0.41 -1.4 764,916 + fpr SO0747 0.43 +0.3 764,916 + fpr SO0747 0.43 +0.0 764,916 + fpr SO0747 0.43 -0.5 764,916 + fpr SO0747 0.43 -0.5 764,916 + fpr SO0747 0.43 +0.2 764,924 - fpr SO0747 0.44 -0.3 764,924 - fpr SO0747 0.44 -1.2 764,953 + fpr SO0747 0.47 -0.8 764,953 + fpr SO0747 0.47 +0.6 764,999 - fpr SO0747 0.54 -0.4 765,036 + fpr SO0747 0.59 +1.0 765,044 - fpr SO0747 0.60 -0.1 765,044 - fpr SO0747 0.60 +1.3 765,044 - fpr SO0747 0.60 +1.7 765,044 - fpr SO0747 0.60 -1.8 765,065 - fpr SO0747 0.62 +0.2 765,065 - fpr SO0747 0.62 -0.3 765,065 - fpr SO0747 0.62 -1.5 765,065 - fpr SO0747 0.62 -0.2 765,173 - fpr SO0747 0.77 -1.3 765,202 - fpr SO0747 0.81 -0.7 765,238 + fpr SO0747 0.85 +0.9 765,383 + -0.8 765,426 + -0.9 765,453 + +0.1 765,475 - +1.7 765,475 - -1.2
Or see this region's nucleotide sequence