Strain Fitness in Shewanella oneidensis MR-1 around SO0690

Experiment: Cisplatin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0688 and SO0689 overlap by 4 nucleotidesSO0689 and SO0690 are separated by 142 nucleotidesSO0690 and SO0691 are separated by 400 nucleotidesSO0691 and galM are separated by 104 nucleotides SO0688: SO0688 - hypothetical protein (NCBI ptt file), at 705,915 to 707,714 SO0688 SO0689: SO0689 - hypothetical protein (NCBI ptt file), at 707,711 to 707,932 SO0689 SO0690: SO0690 - type II DNA modification methyltransferase, putative (NCBI ptt file), at 708,075 to 708,836 SO0690 SO0691: SO0691 - hypothetical protein (NCBI ptt file), at 709,237 to 709,641 SO0691 SO0693: galM - aldose 1-epimerase (NCBI ptt file), at 709,746 to 710,777 galM Position (kb) 708 709Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 707.174 kb on + strand, within SO0688at 707.185 kb on + strand, within SO0688at 707.243 kb on + strand, within SO0688at 707.353 kb on - strand, within SO0688at 707.411 kb on + strand, within SO0688at 707.435 kb on + strand, within SO0688at 707.481 kb on - strand, within SO0688at 707.486 kb on - strand, within SO0688at 707.526 kb on - strand, within SO0688at 707.526 kb on - strand, within SO0688at 707.526 kb on - strand, within SO0688at 707.591 kb on + strandat 707.591 kb on + strandat 707.591 kb on + strandat 707.591 kb on + strandat 707.591 kb on + strandat 707.597 kb on - strandat 707.599 kb on - strandat 707.599 kb on - strandat 707.599 kb on - strandat 707.599 kb on - strandat 707.599 kb on - strandat 707.599 kb on - strandat 707.599 kb on - strandat 707.623 kb on + strandat 707.639 kb on + strandat 707.646 kb on + strandat 707.646 kb on + strandat 707.651 kb on + strandat 707.726 kb on - strandat 707.746 kb on - strand, within SO0689at 707.748 kb on - strand, within SO0689at 707.774 kb on + strand, within SO0689at 707.782 kb on - strand, within SO0689at 707.804 kb on - strand, within SO0689at 707.824 kb on - strand, within SO0689at 707.983 kb on + strandat 707.991 kb on - strandat 707.991 kb on - strandat 707.991 kb on - strandat 707.991 kb on - strandat 708.002 kb on + strandat 708.002 kb on + strandat 708.010 kb on - strandat 708.010 kb on - strandat 708.110 kb on + strandat 708.150 kb on + strandat 708.160 kb on + strand, within SO0690at 708.167 kb on + strand, within SO0690at 708.170 kb on + strand, within SO0690at 708.173 kb on + strand, within SO0690at 708.212 kb on - strand, within SO0690at 708.212 kb on - strand, within SO0690at 708.254 kb on + strand, within SO0690at 708.277 kb on + strand, within SO0690at 708.299 kb on + strand, within SO0690at 708.299 kb on + strand, within SO0690at 708.309 kb on + strand, within SO0690at 708.317 kb on - strand, within SO0690at 708.319 kb on + strand, within SO0690at 708.327 kb on - strand, within SO0690at 708.327 kb on - strand, within SO0690at 708.361 kb on - strand, within SO0690at 708.361 kb on - strand, within SO0690at 708.361 kb on - strand, within SO0690at 708.361 kb on - strand, within SO0690at 708.432 kb on + strand, within SO0690at 708.461 kb on - strand, within SO0690at 708.468 kb on + strand, within SO0690at 708.468 kb on + strand, within SO0690at 708.468 kb on + strand, within SO0690at 708.476 kb on - strand, within SO0690at 708.476 kb on - strand, within SO0690at 708.497 kb on + strand, within SO0690at 708.497 kb on + strand, within SO0690at 708.559 kb on + strand, within SO0690at 708.567 kb on - strand, within SO0690at 708.567 kb on - strand, within SO0690at 708.578 kb on + strand, within SO0690at 708.580 kb on - strand, within SO0690at 708.603 kb on - strand, within SO0690at 708.624 kb on + strand, within SO0690at 708.632 kb on - strand, within SO0690at 708.638 kb on + strand, within SO0690at 708.646 kb on - strand, within SO0690at 708.682 kb on - strand, within SO0690at 708.696 kb on + strand, within SO0690at 708.714 kb on - strand, within SO0690at 708.714 kb on - strand, within SO0690at 708.786 kb on + strandat 708.794 kb on - strandat 708.796 kb on + strandat 708.796 kb on + strandat 708.796 kb on + strandat 708.809 kb on - strandat 708.862 kb on - strandat 708.862 kb on - strandat 708.919 kb on + strandat 708.934 kb on - strandat 709.159 kb on + strandat 709.213 kb on - strandat 709.239 kb on + strandat 709.247 kb on - strandat 709.275 kb on + strandat 709.337 kb on - strand, within SO0691at 709.337 kb on - strand, within SO0691at 709.463 kb on - strand, within SO0691at 709.516 kb on + strand, within SO0691at 709.521 kb on + strand, within SO0691at 709.527 kb on + strand, within SO0691at 709.554 kb on + strand, within SO0691at 709.554 kb on + strand, within SO0691at 709.562 kb on - strand, within SO0691at 709.562 kb on - strand, within SO0691at 709.665 kb on + strandat 709.671 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.004 mg/ml
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707,174 + SO0688 0.70 -0.4
707,185 + SO0688 0.71 -1.4
707,243 + SO0688 0.74 +0.7
707,353 - SO0688 0.80 +0.8
707,411 + SO0688 0.83 +1.2
707,435 + SO0688 0.84 +1.9
707,481 - SO0688 0.87 -0.4
707,486 - SO0688 0.87 -0.9
707,526 - SO0688 0.90 +0.4
707,526 - SO0688 0.90 +0.1
707,526 - SO0688 0.90 -1.3
707,591 + +0.3
707,591 + +0.8
707,591 + +1.3
707,591 + -0.8
707,591 + -0.0
707,597 - -0.5
707,599 - +1.3
707,599 - +1.0
707,599 - +0.3
707,599 - +1.2
707,599 - +0.6
707,599 - -0.0
707,599 - +1.4
707,623 + -0.5
707,639 + +0.7
707,646 + -0.8
707,646 + +0.9
707,651 + +0.9
707,726 - -0.0
707,746 - SO0689 0.16 +0.6
707,748 - SO0689 0.17 -0.3
707,774 + SO0689 0.28 -0.8
707,782 - SO0689 0.32 +0.8
707,804 - SO0689 0.42 -0.8
707,824 - SO0689 0.51 +1.2
707,983 + -0.4
707,991 - -1.9
707,991 - +1.0
707,991 - -0.5
707,991 - +0.3
708,002 + +2.5
708,002 + +0.9
708,010 - +0.4
708,010 - -0.3
708,110 + -0.0
708,150 + +2.7
708,160 + SO0690 0.11 -1.2
708,167 + SO0690 0.12 +1.4
708,170 + SO0690 0.12 +0.9
708,173 + SO0690 0.13 -0.2
708,212 - SO0690 0.18 -0.4
708,212 - SO0690 0.18 +0.3
708,254 + SO0690 0.23 +0.9
708,277 + SO0690 0.27 -0.7
708,299 + SO0690 0.29 +0.7
708,299 + SO0690 0.29 +0.5
708,309 + SO0690 0.31 +3.0
708,317 - SO0690 0.32 -0.2
708,319 + SO0690 0.32 +0.5
708,327 - SO0690 0.33 +0.2
708,327 - SO0690 0.33 -0.4
708,361 - SO0690 0.38 -0.9
708,361 - SO0690 0.38 +1.2
708,361 - SO0690 0.38 +1.1
708,361 - SO0690 0.38 +0.4
708,432 + SO0690 0.47 +0.6
708,461 - SO0690 0.51 -1.1
708,468 + SO0690 0.52 -0.4
708,468 + SO0690 0.52 -0.2
708,468 + SO0690 0.52 -1.2
708,476 - SO0690 0.53 +0.8
708,476 - SO0690 0.53 +2.0
708,497 + SO0690 0.55 -0.4
708,497 + SO0690 0.55 +0.1
708,559 + SO0690 0.64 -0.2
708,567 - SO0690 0.65 +0.7
708,567 - SO0690 0.65 +0.1
708,578 + SO0690 0.66 +2.5
708,580 - SO0690 0.66 +1.0
708,603 - SO0690 0.69 +1.3
708,624 + SO0690 0.72 +0.9
708,632 - SO0690 0.73 +1.7
708,638 + SO0690 0.74 -1.5
708,646 - SO0690 0.75 -0.7
708,682 - SO0690 0.80 +0.6
708,696 + SO0690 0.81 +0.8
708,714 - SO0690 0.84 +0.1
708,714 - SO0690 0.84 -0.5
708,786 + +1.2
708,794 - -0.1
708,796 + +1.6
708,796 + +0.9
708,796 + +0.4
708,809 - +0.5
708,862 - -0.8
708,862 - +1.1
708,919 + +0.5
708,934 - +1.5
709,159 + +0.9
709,213 - -2.5
709,239 + +1.1
709,247 - +1.3
709,275 + +0.5
709,337 - SO0691 0.25 +0.6
709,337 - SO0691 0.25 +1.3
709,463 - SO0691 0.56 +0.6
709,516 + SO0691 0.69 +1.0
709,521 + SO0691 0.70 +0.7
709,527 + SO0691 0.72 -1.2
709,554 + SO0691 0.78 +0.7
709,554 + SO0691 0.78 -2.9
709,562 - SO0691 0.80 -0.1
709,562 - SO0691 0.80 -0.7
709,665 + -0.0
709,671 + +0.7

Or see this region's nucleotide sequence