Strain Fitness in Shewanella oneidensis MR-1 around SO0669

Experiment: Cisplatin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0668 and SO0669 are separated by 147 nucleotidesSO0669 and SO0670 are separated by 44 nucleotides SO0668: SO0668 - prophage MuSo1, F protein, putative (NCBI ptt file), at 686,773 to 688,110 SO0668 SO0669: SO0669 - prophage MuSo1, virion morphogenesis protein (NCBI ptt file), at 688,258 to 688,710 SO0669 SO0670: SO0670 - hypothetical protein (NCBI ptt file), at 688,755 to 689,648 SO0670 Position (kb) 688 689Strain fitness (log2 ratio) -3 -2 -1 0 1at 687.303 kb on + strand, within SO0668at 687.310 kb on + strand, within SO0668at 687.311 kb on - strand, within SO0668at 687.311 kb on - strand, within SO0668at 687.354 kb on + strand, within SO0668at 687.354 kb on + strand, within SO0668at 687.362 kb on - strand, within SO0668at 687.362 kb on - strand, within SO0668at 687.362 kb on - strand, within SO0668at 687.362 kb on - strand, within SO0668at 687.399 kb on - strand, within SO0668at 687.405 kb on + strand, within SO0668at 687.441 kb on + strand, within SO0668at 687.441 kb on + strand, within SO0668at 687.621 kb on - strand, within SO0668at 687.664 kb on + strand, within SO0668at 687.722 kb on - strand, within SO0668at 687.722 kb on - strand, within SO0668at 687.755 kb on + strand, within SO0668at 687.832 kb on - strand, within SO0668at 687.897 kb on + strand, within SO0668at 687.897 kb on + strand, within SO0668at 687.897 kb on + strand, within SO0668at 687.905 kb on - strand, within SO0668at 687.905 kb on - strand, within SO0668at 687.936 kb on + strand, within SO0668at 687.952 kb on + strand, within SO0668at 687.971 kb on + strand, within SO0668at 687.971 kb on + strand, within SO0668at 687.972 kb on + strand, within SO0668at 687.974 kb on - strand, within SO0668at 687.980 kb on - strandat 687.992 kb on - strandat 688.098 kb on + strandat 688.156 kb on - strandat 688.214 kb on + strandat 688.226 kb on + strandat 688.231 kb on + strandat 688.374 kb on - strand, within SO0669at 688.420 kb on + strand, within SO0669at 688.442 kb on - strand, within SO0669at 688.452 kb on + strand, within SO0669at 688.489 kb on + strand, within SO0669at 688.499 kb on + strand, within SO0669at 688.571 kb on - strand, within SO0669at 688.648 kb on - strand, within SO0669at 688.651 kb on + strand, within SO0669at 688.659 kb on - strand, within SO0669at 688.659 kb on - strand, within SO0669at 688.659 kb on - strand, within SO0669at 688.674 kb on + strandat 688.674 kb on + strandat 688.704 kb on - strandat 688.757 kb on + strandat 688.774 kb on - strandat 688.802 kb on + strandat 688.836 kb on - strandat 688.885 kb on + strand, within SO0670at 688.894 kb on - strand, within SO0670at 688.914 kb on + strand, within SO0670at 688.955 kb on + strand, within SO0670at 688.956 kb on + strand, within SO0670at 688.956 kb on + strand, within SO0670at 688.964 kb on - strand, within SO0670at 688.972 kb on + strand, within SO0670at 688.972 kb on + strand, within SO0670at 688.999 kb on - strand, within SO0670at 689.003 kb on + strand, within SO0670at 689.011 kb on - strand, within SO0670at 689.188 kb on + strand, within SO0670at 689.203 kb on - strand, within SO0670at 689.237 kb on + strand, within SO0670at 689.242 kb on + strand, within SO0670at 689.282 kb on + strand, within SO0670at 689.287 kb on + strand, within SO0670at 689.287 kb on + strand, within SO0670at 689.295 kb on - strand, within SO0670at 689.295 kb on - strand, within SO0670at 689.342 kb on + strand, within SO0670at 689.350 kb on - strand, within SO0670at 689.365 kb on - strand, within SO0670at 689.365 kb on - strand, within SO0670at 689.420 kb on + strand, within SO0670at 689.428 kb on - strand, within SO0670at 689.499 kb on - strand, within SO0670at 689.602 kb on + strandat 689.603 kb on - strandat 689.610 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.004 mg/ml
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687,303 + SO0668 0.40 -0.6
687,310 + SO0668 0.40 -0.1
687,311 - SO0668 0.40 +0.1
687,311 - SO0668 0.40 +0.0
687,354 + SO0668 0.43 +1.3
687,354 + SO0668 0.43 -0.3
687,362 - SO0668 0.44 +1.3
687,362 - SO0668 0.44 +0.3
687,362 - SO0668 0.44 +0.8
687,362 - SO0668 0.44 -0.6
687,399 - SO0668 0.47 -0.5
687,405 + SO0668 0.47 -0.7
687,441 + SO0668 0.50 +0.8
687,441 + SO0668 0.50 +1.6
687,621 - SO0668 0.63 -3.2
687,664 + SO0668 0.67 -0.7
687,722 - SO0668 0.71 +1.0
687,722 - SO0668 0.71 +0.3
687,755 + SO0668 0.73 +0.6
687,832 - SO0668 0.79 -3.0
687,897 + SO0668 0.84 +1.7
687,897 + SO0668 0.84 +1.2
687,897 + SO0668 0.84 +1.0
687,905 - SO0668 0.85 +1.1
687,905 - SO0668 0.85 -0.4
687,936 + SO0668 0.87 -1.6
687,952 + SO0668 0.88 +0.6
687,971 + SO0668 0.90 -1.0
687,971 + SO0668 0.90 +0.4
687,972 + SO0668 0.90 +1.3
687,974 - SO0668 0.90 -1.0
687,980 - -0.3
687,992 - +0.1
688,098 + +0.9
688,156 - +0.8
688,214 + +1.0
688,226 + -0.1
688,231 + +0.1
688,374 - SO0669 0.26 +1.6
688,420 + SO0669 0.36 +0.8
688,442 - SO0669 0.41 -0.5
688,452 + SO0669 0.43 -0.0
688,489 + SO0669 0.51 -0.4
688,499 + SO0669 0.53 +0.1
688,571 - SO0669 0.69 +1.2
688,648 - SO0669 0.86 +1.1
688,651 + SO0669 0.87 -0.7
688,659 - SO0669 0.89 -1.2
688,659 - SO0669 0.89 +0.7
688,659 - SO0669 0.89 +0.1
688,674 + +1.0
688,674 + +0.5
688,704 - +1.3
688,757 + -0.1
688,774 - -0.1
688,802 + +0.8
688,836 - -1.5
688,885 + SO0670 0.15 -1.7
688,894 - SO0670 0.16 -0.1
688,914 + SO0670 0.18 -0.6
688,955 + SO0670 0.22 -0.4
688,956 + SO0670 0.22 -0.2
688,956 + SO0670 0.22 +0.6
688,964 - SO0670 0.23 -0.7
688,972 + SO0670 0.24 +0.2
688,972 + SO0670 0.24 -1.9
688,999 - SO0670 0.27 -0.5
689,003 + SO0670 0.28 +0.4
689,011 - SO0670 0.29 +1.2
689,188 + SO0670 0.48 -0.8
689,203 - SO0670 0.50 +0.5
689,237 + SO0670 0.54 +0.4
689,242 + SO0670 0.54 +0.4
689,282 + SO0670 0.59 +0.6
689,287 + SO0670 0.60 -0.3
689,287 + SO0670 0.60 -0.6
689,295 - SO0670 0.60 +0.3
689,295 - SO0670 0.60 -0.1
689,342 + SO0670 0.66 +1.0
689,350 - SO0670 0.67 -2.0
689,365 - SO0670 0.68 -0.1
689,365 - SO0670 0.68 -0.9
689,420 + SO0670 0.74 +0.2
689,428 - SO0670 0.75 +1.1
689,499 - SO0670 0.83 -1.6
689,602 + -1.1
689,603 - +1.1
689,610 - +0.3

Or see this region's nucleotide sequence