Experiment: Cisplatin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0643 and SO0644 are separated by 68 nucleotides SO0644 and SO0645 are separated by 57 nucleotides SO0645 and SO0646 overlap by 14 nucleotides SO0646 and SO0647 overlap by 1 nucleotides SO0647 and SO0648 are separated by 4 nucleotides
SO0643: SO0643 - transposase, putative (NCBI ptt file), at 670,490 to 672,637
SO0643
SO0644: SO0644 - prophage MuSo1, DNA transposition protein, putative (NCBI ptt file), at 672,706 to 673,425
SO0644
SO0645: SO0645 - hypothetical protein (NCBI ptt file), at 673,483 to 674,028
SO0645
SO0646: SO0646 - hypothetical protein (NCBI ptt file), at 674,015 to 674,509
SO0646
SO0647: SO0647 - hypothetical protein (NCBI ptt file), at 674,509 to 674,724
SO0647
SO0648: SO0648 - conserved hypothetical protein (NCBI ptt file), at 674,729 to 675,355
SO0648
Position (kb) 673
674
675 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 672.528 kb on + strand at 672.746 kb on + strand at 672.753 kb on - strand at 672.957 kb on + strand, within SO0644 at 672.985 kb on - strand, within SO0644 at 673.006 kb on - strand, within SO0644 at 673.094 kb on - strand, within SO0644 at 673.104 kb on + strand, within SO0644 at 673.104 kb on + strand, within SO0644 at 673.106 kb on + strand, within SO0644 at 673.142 kb on + strand, within SO0644 at 673.142 kb on + strand, within SO0644 at 673.142 kb on + strand, within SO0644 at 673.161 kb on + strand, within SO0644 at 673.216 kb on - strand, within SO0644 at 673.258 kb on - strand, within SO0644 at 673.290 kb on + strand, within SO0644 at 673.306 kb on - strand, within SO0644 at 673.337 kb on - strand, within SO0644 at 673.433 kb on - strand at 673.493 kb on + strand at 673.503 kb on + strand at 673.511 kb on + strand at 673.511 kb on + strand at 673.511 kb on - strand at 673.539 kb on - strand, within SO0645 at 673.558 kb on + strand, within SO0645 at 673.558 kb on + strand, within SO0645 at 673.558 kb on + strand at 673.558 kb on + strand, within SO0645 at 673.558 kb on + strand, within SO0645 at 673.558 kb on + strand, within SO0645 at 673.558 kb on + strand, within SO0645 at 673.558 kb on + strand, within SO0645 at 673.566 kb on - strand, within SO0645 at 673.566 kb on - strand, within SO0645 at 673.566 kb on - strand, within SO0645 at 673.566 kb on - strand, within SO0645 at 673.566 kb on - strand, within SO0645 at 673.571 kb on + strand, within SO0645 at 673.571 kb on + strand, within SO0645 at 673.571 kb on + strand, within SO0645 at 673.579 kb on - strand, within SO0645 at 673.589 kb on - strand, within SO0645 at 673.626 kb on + strand, within SO0645 at 673.709 kb on - strand, within SO0645 at 673.778 kb on + strand, within SO0645 at 673.778 kb on + strand, within SO0645 at 673.778 kb on + strand, within SO0645 at 673.778 kb on + strand, within SO0645 at 673.786 kb on - strand, within SO0645 at 673.786 kb on - strand, within SO0645 at 673.786 kb on - strand, within SO0645 at 673.786 kb on - strand, within SO0645 at 673.786 kb on - strand, within SO0645 at 673.837 kb on + strand, within SO0645 at 673.902 kb on - strand, within SO0645 at 673.948 kb on - strand, within SO0645 at 674.039 kb on + strand at 674.066 kb on - strand, within SO0646 at 674.118 kb on - strand, within SO0646 at 674.186 kb on + strand, within SO0646 at 674.188 kb on + strand, within SO0646 at 674.188 kb on + strand, within SO0646 at 674.193 kb on + strand, within SO0646 at 674.194 kb on - strand, within SO0646 at 674.201 kb on - strand, within SO0646 at 674.262 kb on + strand, within SO0646 at 674.270 kb on - strand, within SO0646 at 674.332 kb on + strand, within SO0646 at 674.446 kb on + strand, within SO0646 at 674.446 kb on + strand, within SO0646 at 674.446 kb on + strand, within SO0646 at 674.454 kb on - strand, within SO0646 at 674.467 kb on + strand at 674.511 kb on - strand at 674.528 kb on + strand at 674.531 kb on - strand, within SO0647 at 674.546 kb on + strand, within SO0647 at 674.546 kb on + strand, within SO0647 at 674.546 kb on + strand, within SO0647 at 674.546 kb on + strand, within SO0647 at 674.546 kb on + strand, within SO0647 at 674.546 kb on + strand, within SO0647 at 674.546 kb on + strand, within SO0647 at 674.546 kb on + strand, within SO0647 at 674.546 kb on + strand, within SO0647 at 674.546 kb on + strand, within SO0647 at 674.546 kb on + strand, within SO0647 at 674.546 kb on + strand, within SO0647 at 674.546 kb on + strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.554 kb on - strand, within SO0647 at 674.601 kb on + strand, within SO0647 at 674.652 kb on + strand, within SO0647 at 674.652 kb on + strand, within SO0647 at 674.660 kb on - strand, within SO0647 at 674.704 kb on - strand at 674.828 kb on - strand, within SO0648 at 674.850 kb on - strand, within SO0648 at 674.900 kb on - strand, within SO0648 at 674.938 kb on + strand, within SO0648 at 674.943 kb on + strand, within SO0648 at 674.948 kb on + strand, within SO0648 at 674.958 kb on - strand, within SO0648 at 675.012 kb on + strand, within SO0648
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.004 mg/ml remove 672,528 + +0.7 672,746 + +0.3 672,753 - +0.7 672,957 + SO0644 0.35 +0.1 672,985 - SO0644 0.39 -1.6 673,006 - SO0644 0.42 +0.6 673,094 - SO0644 0.54 -1.5 673,104 + SO0644 0.55 -0.7 673,104 + SO0644 0.55 -0.5 673,106 + SO0644 0.56 -0.3 673,142 + SO0644 0.61 +0.3 673,142 + SO0644 0.61 -2.4 673,142 + SO0644 0.61 -0.1 673,161 + SO0644 0.63 +0.2 673,216 - SO0644 0.71 +0.9 673,258 - SO0644 0.77 +0.6 673,290 + SO0644 0.81 -1.7 673,306 - SO0644 0.83 +0.9 673,337 - SO0644 0.88 -1.1 673,433 - -1.6 673,493 + +0.9 673,503 + +0.0 673,511 + +0.5 673,511 + +0.7 673,511 - -0.9 673,539 - SO0645 0.10 -1.7 673,558 + SO0645 0.14 -1.2 673,558 + SO0645 0.14 -1.0 673,558 + +2.7 673,558 + SO0645 0.14 +0.8 673,558 + SO0645 0.14 -1.5 673,558 + SO0645 0.14 +0.2 673,558 + SO0645 0.14 +1.6 673,558 + SO0645 0.14 +0.5 673,566 - SO0645 0.15 -1.2 673,566 - SO0645 0.15 -0.3 673,566 - SO0645 0.15 +0.3 673,566 - SO0645 0.15 +0.6 673,566 - SO0645 0.15 -0.7 673,571 + SO0645 0.16 -1.1 673,571 + SO0645 0.16 -1.4 673,571 + SO0645 0.16 -0.6 673,579 - SO0645 0.18 +1.2 673,589 - SO0645 0.19 -0.2 673,626 + SO0645 0.26 -0.6 673,709 - SO0645 0.41 +1.9 673,778 + SO0645 0.54 -1.6 673,778 + SO0645 0.54 -0.8 673,778 + SO0645 0.54 +1.0 673,778 + SO0645 0.54 -1.2 673,786 - SO0645 0.55 -1.1 673,786 - SO0645 0.55 -0.0 673,786 - SO0645 0.55 +0.6 673,786 - SO0645 0.55 -0.8 673,786 - SO0645 0.55 -0.8 673,837 + SO0645 0.65 -0.2 673,902 - SO0645 0.77 -3.4 673,948 - SO0645 0.85 -1.7 674,039 + +0.0 674,066 - SO0646 0.10 +0.5 674,118 - SO0646 0.21 +0.0 674,186 + SO0646 0.35 +0.2 674,188 + SO0646 0.35 +0.5 674,188 + SO0646 0.35 +0.9 674,193 + SO0646 0.36 -1.8 674,194 - SO0646 0.36 +1.8 674,201 - SO0646 0.38 -0.1 674,262 + SO0646 0.50 +0.5 674,270 - SO0646 0.52 +1.2 674,332 + SO0646 0.64 -2.6 674,446 + SO0646 0.87 -2.1 674,446 + SO0646 0.87 -0.1 674,446 + SO0646 0.87 -2.2 674,454 - SO0646 0.89 -1.2 674,467 + -0.4 674,511 - +0.5 674,528 + -2.7 674,531 - SO0647 0.10 +1.2 674,546 + SO0647 0.17 -1.4 674,546 + SO0647 0.17 -0.6 674,546 + SO0647 0.17 -2.2 674,546 + SO0647 0.17 -3.9 674,546 + SO0647 0.17 -2.2 674,546 + SO0647 0.17 -3.1 674,546 + SO0647 0.17 -1.8 674,546 + SO0647 0.17 -1.7 674,546 + SO0647 0.17 +0.7 674,546 + SO0647 0.17 -0.9 674,546 + SO0647 0.17 -2.8 674,546 + SO0647 0.17 -1.0 674,546 + SO0647 0.17 -1.2 674,554 - SO0647 0.21 -0.3 674,554 - SO0647 0.21 +0.3 674,554 - SO0647 0.21 +1.2 674,554 - SO0647 0.21 +0.2 674,554 - SO0647 0.21 -0.8 674,554 - SO0647 0.21 +0.9 674,554 - SO0647 0.21 +0.2 674,554 - SO0647 0.21 +0.7 674,554 - SO0647 0.21 +0.0 674,554 - SO0647 0.21 +0.6 674,554 - SO0647 0.21 +0.4 674,554 - SO0647 0.21 +1.1 674,554 - SO0647 0.21 +0.5 674,554 - SO0647 0.21 +0.7 674,554 - SO0647 0.21 +1.6 674,601 + SO0647 0.43 -1.4 674,652 + SO0647 0.66 -1.0 674,652 + SO0647 0.66 -1.9 674,660 - SO0647 0.70 +0.7 674,704 - +1.1 674,828 - SO0648 0.16 +0.0 674,850 - SO0648 0.19 +1.1 674,900 - SO0648 0.27 +0.4 674,938 + SO0648 0.33 -1.5 674,943 + SO0648 0.34 -0.5 674,948 + SO0648 0.35 +0.3 674,958 - SO0648 0.37 -0.2 675,012 + SO0648 0.45 -2.9
Or see this region's nucleotide sequence