Experiment: Cisplatin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0563 and SO0564 are separated by 758 nucleotides SO0564 and SO0565 are separated by 10 nucleotides SO0565 and SO0566 are separated by 4 nucleotides
SO0563: SO0563 - hypothetical protein (NCBI ptt file), at 584,578 to 584,763
SO0563
SO0564: SO0564 - conserved hypothetical protein (NCBI ptt file), at 585,522 to 586,511
SO0564
SO0565: SO0565 - adhesion protein, putative (NCBI ptt file), at 586,522 to 587,403
SO0565
SO0566: SO0566 - ABC 3 transport family protein (NCBI ptt file), at 587,408 to 588,187
SO0566
Position (kb) 585
586
587 Strain fitness (log2 ratio) -2
-1
0
1 at 584.526 kb on - strand at 584.551 kb on - strand at 584.587 kb on + strand at 584.592 kb on + strand at 584.592 kb on + strand at 584.600 kb on - strand, within SO0563 at 584.611 kb on + strand, within SO0563 at 584.748 kb on + strand at 584.748 kb on + strand at 584.756 kb on - strand at 584.756 kb on - strand at 584.758 kb on + strand at 584.761 kb on - strand at 584.778 kb on + strand at 584.786 kb on - strand at 584.789 kb on + strand at 584.832 kb on - strand at 584.839 kb on - strand at 584.840 kb on + strand at 584.890 kb on - strand at 584.919 kb on + strand at 584.919 kb on + strand at 584.919 kb on + strand at 584.920 kb on + strand at 584.927 kb on - strand at 584.927 kb on - strand at 584.927 kb on - strand at 584.927 kb on - strand at 584.928 kb on - strand at 584.935 kb on + strand at 584.970 kb on - strand at 585.008 kb on - strand at 585.091 kb on - strand at 585.111 kb on - strand at 585.139 kb on + strand at 585.147 kb on - strand at 585.147 kb on - strand at 585.152 kb on - strand at 585.214 kb on - strand at 585.220 kb on - strand at 585.220 kb on - strand at 585.227 kb on - strand at 585.228 kb on + strand at 585.446 kb on - strand at 585.448 kb on - strand at 585.476 kb on + strand at 585.493 kb on + strand at 585.494 kb on - strand at 585.494 kb on - strand at 585.494 kb on - strand at 585.494 kb on - strand at 585.501 kb on - strand at 585.780 kb on + strand, within SO0564 at 585.788 kb on - strand, within SO0564 at 586.055 kb on - strand, within SO0564 at 586.168 kb on - strand, within SO0564 at 586.186 kb on - strand, within SO0564 at 586.281 kb on + strand, within SO0564 at 586.292 kb on + strand, within SO0564 at 586.306 kb on + strand, within SO0564 at 586.351 kb on + strand, within SO0564 at 586.542 kb on - strand at 586.579 kb on + strand at 586.579 kb on + strand at 586.678 kb on + strand, within SO0565 at 586.686 kb on - strand, within SO0565 at 586.687 kb on + strand, within SO0565 at 586.847 kb on - strand, within SO0565 at 586.932 kb on + strand, within SO0565 at 586.953 kb on - strand, within SO0565 at 586.958 kb on - strand, within SO0565 at 586.983 kb on + strand, within SO0565 at 587.067 kb on - strand, within SO0565 at 587.104 kb on - strand, within SO0565 at 587.305 kb on + strand, within SO0565 at 587.330 kb on + strand at 587.364 kb on + strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.004 mg/ml remove 584,526 - -0.8 584,551 - +0.4 584,587 + -0.4 584,592 + -0.7 584,592 + +0.7 584,600 - SO0563 0.12 -1.1 584,611 + SO0563 0.18 -0.5 584,748 + -1.6 584,748 + -0.8 584,756 - +0.4 584,756 - +0.0 584,758 + +0.0 584,761 - +0.3 584,778 + +0.7 584,786 - -2.4 584,789 + -0.0 584,832 - +1.1 584,839 - -0.8 584,840 + -0.1 584,890 - -0.5 584,919 + -2.2 584,919 + -0.4 584,919 + +1.5 584,920 + +1.3 584,927 - +0.9 584,927 - -1.9 584,927 - +0.6 584,927 - +0.4 584,928 - +0.6 584,935 + +0.0 584,970 - -1.1 585,008 - +0.2 585,091 - -1.8 585,111 - -2.5 585,139 + -2.4 585,147 - -1.1 585,147 - +0.6 585,152 - +0.9 585,214 - +1.0 585,220 - -1.4 585,220 - -0.2 585,227 - +1.2 585,228 + +0.2 585,446 - -1.1 585,448 - -1.3 585,476 + -1.0 585,493 + -0.4 585,494 - +0.8 585,494 - -1.2 585,494 - -2.1 585,494 - -0.2 585,501 - +0.7 585,780 + SO0564 0.26 +0.7 585,788 - SO0564 0.27 -2.4 586,055 - SO0564 0.54 -1.8 586,168 - SO0564 0.65 +0.8 586,186 - SO0564 0.67 -0.5 586,281 + SO0564 0.77 -0.0 586,292 + SO0564 0.78 -0.8 586,306 + SO0564 0.79 -1.8 586,351 + SO0564 0.84 +0.0 586,542 - -0.0 586,579 + +0.9 586,579 + -1.1 586,678 + SO0565 0.18 -0.7 586,686 - SO0565 0.19 -2.7 586,687 + SO0565 0.19 +0.2 586,847 - SO0565 0.37 -0.1 586,932 + SO0565 0.46 +0.4 586,953 - SO0565 0.49 +0.4 586,958 - SO0565 0.49 -0.2 586,983 + SO0565 0.52 +0.2 587,067 - SO0565 0.62 -1.6 587,104 - SO0565 0.66 -0.9 587,305 + SO0565 0.89 +0.5 587,330 + +0.6 587,364 + +0.2 587,370 - -0.2 587,370 - +1.5 587,370 - +0.1 587,370 - -1.6
Or see this region's nucleotide sequence