Experiment: Cisplatin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0462 and SO0463 are separated by 47 nucleotides SO0463 and SO0464 are separated by 34 nucleotides
SO0462: SO0462 - hypothetical protein (NCBI ptt file), at 486,557 to 486,982
SO0462
SO0463: SO0463 - conserved hypothetical protein (NCBI ptt file), at 487,030 to 487,908
SO0463
SO0464: SO0464 - MutT/nudix family protein (NCBI ptt file), at 487,943 to 488,350
SO0464
Position (kb) 487
488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 487.119 kb on + strand, within SO0463 at 487.126 kb on - strand, within SO0463 at 487.354 kb on + strand, within SO0463 at 487.362 kb on - strand, within SO0463 at 487.375 kb on - strand, within SO0463 at 487.420 kb on - strand, within SO0463 at 487.462 kb on + strand, within SO0463 at 487.470 kb on - strand, within SO0463 at 487.561 kb on + strand, within SO0463 at 487.561 kb on + strand, within SO0463 at 487.561 kb on + strand, within SO0463 at 487.569 kb on - strand, within SO0463 at 487.569 kb on - strand, within SO0463 at 487.583 kb on + strand, within SO0463 at 487.803 kb on + strand, within SO0463 at 487.811 kb on + strand, within SO0463 at 487.940 kb on - strand at 487.966 kb on + strand at 487.967 kb on - strand at 488.002 kb on - strand, within SO0464 at 488.235 kb on + strand, within SO0464 at 488.249 kb on + strand, within SO0464 at 488.325 kb on + strand at 488.325 kb on + strand at 488.337 kb on + strand at 488.364 kb on + strand at 488.412 kb on - strand at 488.528 kb on - strand at 488.560 kb on + strand at 488.633 kb on + strand at 488.633 kb on + strand at 488.641 kb on - strand at 488.641 kb on - strand at 488.641 kb on - strand at 488.641 kb on - strand at 488.683 kb on - strand at 488.734 kb on + strand at 488.753 kb on - strand at 488.855 kb on - strand at 489.061 kb on + strand at 489.061 kb on + strand at 489.103 kb on - strand at 489.244 kb on + strand at 489.253 kb on - strand at 489.310 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.004 mg/ml remove 487,119 + SO0463 0.10 +0.3 487,126 - SO0463 0.11 -2.6 487,354 + SO0463 0.37 +0.1 487,362 - SO0463 0.38 +0.5 487,375 - SO0463 0.39 -0.1 487,420 - SO0463 0.44 +0.2 487,462 + SO0463 0.49 -0.2 487,470 - SO0463 0.50 -0.4 487,561 + SO0463 0.60 +0.1 487,561 + SO0463 0.60 +1.4 487,561 + SO0463 0.60 -0.6 487,569 - SO0463 0.61 -0.6 487,569 - SO0463 0.61 -0.9 487,583 + SO0463 0.63 -0.3 487,803 + SO0463 0.88 -1.2 487,811 + SO0463 0.89 +0.8 487,940 - +0.4 487,966 + -0.2 487,967 - +0.6 488,002 - SO0464 0.14 +1.6 488,235 + SO0464 0.72 +1.0 488,249 + SO0464 0.75 +0.2 488,325 + +0.7 488,325 + -1.0 488,337 + +0.3 488,364 + +0.0 488,412 - -2.1 488,528 - +0.1 488,560 + -0.2 488,633 + -1.3 488,633 + -1.2 488,641 - -1.1 488,641 - +0.9 488,641 - +0.7 488,641 - -0.5 488,683 - -1.5 488,734 + -0.0 488,753 - -2.8 488,855 - +0.3 489,061 + +1.3 489,061 + -0.5 489,103 - +0.1 489,244 + -0.5 489,253 - -0.7 489,310 - +0.4
Or see this region's nucleotide sequence