Experiment: Cisplatin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0438 and SO0439 overlap by 4 nucleotides SO0439 and SO0440 are separated by 97 nucleotides SO0440 and purD are separated by 178 nucleotides
SO0438: SO0438 - oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file), at 463,857 to 464,660
SO0438
SO0439: SO0439 - hypothetical protein (NCBI ptt file), at 464,657 to 464,932
SO0439
SO0440: SO0440 - conserved hypothetical protein (NCBI ptt file), at 465,030 to 468,251
SO0440
SO0441: purD - phosphoribosylamine--glycine ligase (NCBI ptt file), at 468,430 to 469,728
purD
Position (kb) 465
466
467
468
469 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 464.053 kb on + strand, within SO0438 at 464.149 kb on + strand, within SO0438 at 464.258 kb on + strand, within SO0438 at 464.260 kb on + strand, within SO0438 at 464.291 kb on + strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.456 kb on + strand, within SO0438 at 464.481 kb on + strand, within SO0438 at 464.511 kb on - strand, within SO0438 at 464.593 kb on + strand at 464.601 kb on - strand at 464.601 kb on - strand at 464.646 kb on + strand at 464.914 kb on + strand at 464.916 kb on + strand at 464.946 kb on + strand at 465.059 kb on - strand at 465.082 kb on - strand at 465.107 kb on + strand at 465.107 kb on + strand at 465.108 kb on + strand at 465.108 kb on + strand at 465.116 kb on - strand at 465.116 kb on - strand at 465.175 kb on + strand at 465.228 kb on - strand at 465.273 kb on - strand at 465.316 kb on - strand at 465.507 kb on + strand, within SO0440 at 465.549 kb on + strand, within SO0440 at 465.649 kb on - strand, within SO0440 at 465.758 kb on - strand, within SO0440 at 465.777 kb on + strand, within SO0440 at 465.813 kb on + strand, within SO0440 at 465.813 kb on + strand, within SO0440 at 465.813 kb on + strand, within SO0440 at 465.890 kb on - strand, within SO0440 at 465.948 kb on - strand, within SO0440 at 465.948 kb on - strand, within SO0440 at 466.052 kb on + strand, within SO0440 at 466.128 kb on + strand, within SO0440 at 466.128 kb on + strand, within SO0440 at 466.128 kb on + strand, within SO0440 at 466.128 kb on + strand, within SO0440 at 466.136 kb on - strand, within SO0440 at 466.136 kb on - strand, within SO0440 at 466.136 kb on - strand, within SO0440 at 466.136 kb on - strand, within SO0440 at 466.136 kb on - strand, within SO0440 at 466.136 kb on - strand, within SO0440 at 466.136 kb on - strand, within SO0440 at 466.138 kb on + strand, within SO0440 at 466.162 kb on + strand, within SO0440 at 466.162 kb on + strand, within SO0440 at 466.170 kb on - strand, within SO0440 at 466.264 kb on - strand, within SO0440 at 466.419 kb on + strand, within SO0440 at 466.420 kb on + strand, within SO0440 at 466.427 kb on - strand, within SO0440 at 466.427 kb on - strand, within SO0440 at 466.427 kb on - strand, within SO0440 at 466.475 kb on + strand, within SO0440 at 466.475 kb on + strand, within SO0440 at 466.525 kb on + strand, within SO0440 at 466.650 kb on - strand, within SO0440 at 466.650 kb on - strand, within SO0440 at 466.678 kb on - strand, within SO0440 at 466.689 kb on + strand, within SO0440 at 466.763 kb on + strand, within SO0440 at 466.763 kb on + strand, within SO0440 at 466.771 kb on - strand, within SO0440 at 466.771 kb on - strand, within SO0440 at 466.771 kb on - strand, within SO0440 at 466.888 kb on + strand, within SO0440 at 466.930 kb on - strand, within SO0440 at 466.945 kb on - strand, within SO0440 at 466.986 kb on - strand, within SO0440 at 466.994 kb on - strand, within SO0440 at 467.045 kb on - strand, within SO0440 at 467.152 kb on + strand, within SO0440 at 467.236 kb on + strand, within SO0440 at 467.263 kb on + strand, within SO0440 at 467.271 kb on - strand, within SO0440 at 467.271 kb on - strand, within SO0440 at 467.324 kb on - strand, within SO0440 at 467.508 kb on + strand, within SO0440 at 467.527 kb on + strand, within SO0440 at 467.533 kb on - strand, within SO0440 at 467.545 kb on - strand, within SO0440 at 467.575 kb on + strand, within SO0440 at 467.625 kb on + strand, within SO0440 at 467.651 kb on + strand, within SO0440 at 467.669 kb on + strand, within SO0440 at 467.669 kb on - strand, within SO0440 at 467.788 kb on + strand, within SO0440 at 467.796 kb on - strand, within SO0440 at 467.845 kb on - strand, within SO0440 at 467.879 kb on + strand, within SO0440 at 467.930 kb on + strand at 468.060 kb on - strand at 468.157 kb on + strand at 468.167 kb on - strand at 468.175 kb on - strand at 468.204 kb on - strand at 468.219 kb on + strand at 468.421 kb on + strand at 468.429 kb on - strand at 468.441 kb on + strand at 468.441 kb on - strand at 468.492 kb on - strand at 468.550 kb on + strand at 468.550 kb on + strand at 468.553 kb on - strand at 468.589 kb on + strand, within purD at 468.636 kb on - strand, within purD at 468.682 kb on + strand, within purD at 468.779 kb on + strand, within purD at 468.785 kb on - strand, within purD at 468.899 kb on + strand, within purD at 468.900 kb on - strand, within purD at 468.915 kb on - strand, within purD at 468.915 kb on - strand, within purD at 468.951 kb on + strand, within purD at 469.016 kb on - strand, within purD
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.004 mg/ml remove 464,053 + SO0438 0.24 -0.1 464,149 + SO0438 0.36 +1.1 464,258 + SO0438 0.50 -0.3 464,260 + SO0438 0.50 +0.8 464,291 + SO0438 0.54 +1.2 464,299 - SO0438 0.55 +0.7 464,299 - SO0438 0.55 -1.2 464,299 - SO0438 0.55 +0.4 464,299 - SO0438 0.55 +0.5 464,456 + SO0438 0.75 +1.1 464,481 + SO0438 0.78 -0.9 464,511 - SO0438 0.81 +1.8 464,593 + -1.0 464,601 - -0.3 464,601 - -1.5 464,646 + +0.5 464,914 + +1.5 464,916 + -1.0 464,946 + -1.4 465,059 - +0.2 465,082 - +0.6 465,107 + -0.6 465,107 + +0.5 465,108 + -1.8 465,108 + +0.5 465,116 - -1.5 465,116 - +0.2 465,175 + +0.0 465,228 - -2.8 465,273 - +0.1 465,316 - -1.3 465,507 + SO0440 0.15 +0.2 465,549 + SO0440 0.16 -0.0 465,649 - SO0440 0.19 -2.1 465,758 - SO0440 0.23 -1.1 465,777 + SO0440 0.23 +0.3 465,813 + SO0440 0.24 -0.9 465,813 + SO0440 0.24 -0.0 465,813 + SO0440 0.24 +0.6 465,890 - SO0440 0.27 -1.0 465,948 - SO0440 0.28 -1.9 465,948 - SO0440 0.28 +1.0 466,052 + SO0440 0.32 -0.5 466,128 + SO0440 0.34 -3.5 466,128 + SO0440 0.34 -0.4 466,128 + SO0440 0.34 -0.2 466,128 + SO0440 0.34 +0.5 466,136 - SO0440 0.34 -0.7 466,136 - SO0440 0.34 -0.8 466,136 - SO0440 0.34 -0.6 466,136 - SO0440 0.34 +0.3 466,136 - SO0440 0.34 +0.4 466,136 - SO0440 0.34 -0.9 466,136 - SO0440 0.34 -0.6 466,138 + SO0440 0.34 -0.6 466,162 + SO0440 0.35 +0.4 466,162 + SO0440 0.35 +0.4 466,170 - SO0440 0.35 -1.8 466,264 - SO0440 0.38 +0.5 466,419 + SO0440 0.43 +0.9 466,420 + SO0440 0.43 +0.5 466,427 - SO0440 0.43 +0.1 466,427 - SO0440 0.43 -0.5 466,427 - SO0440 0.43 -0.3 466,475 + SO0440 0.45 +0.8 466,475 + SO0440 0.45 -1.0 466,525 + SO0440 0.46 +0.0 466,650 - SO0440 0.50 +1.0 466,650 - SO0440 0.50 -0.3 466,678 - SO0440 0.51 +0.1 466,689 + SO0440 0.51 -0.8 466,763 + SO0440 0.54 +2.2 466,763 + SO0440 0.54 +0.1 466,771 - SO0440 0.54 -0.0 466,771 - SO0440 0.54 -2.8 466,771 - SO0440 0.54 -1.0 466,888 + SO0440 0.58 -1.4 466,930 - SO0440 0.59 +0.3 466,945 - SO0440 0.59 -1.4 466,986 - SO0440 0.61 -1.2 466,994 - SO0440 0.61 -0.3 467,045 - SO0440 0.63 -1.0 467,152 + SO0440 0.66 -0.6 467,236 + SO0440 0.68 +0.6 467,263 + SO0440 0.69 -1.4 467,271 - SO0440 0.70 +0.5 467,271 - SO0440 0.70 -0.5 467,324 - SO0440 0.71 -0.9 467,508 + SO0440 0.77 -0.5 467,527 + SO0440 0.77 -1.2 467,533 - SO0440 0.78 -0.5 467,545 - SO0440 0.78 -0.3 467,575 + SO0440 0.79 +0.3 467,625 + SO0440 0.81 +0.2 467,651 + SO0440 0.81 -1.2 467,669 + SO0440 0.82 -0.7 467,669 - SO0440 0.82 -1.6 467,788 + SO0440 0.86 -0.4 467,796 - SO0440 0.86 -1.4 467,845 - SO0440 0.87 +0.3 467,879 + SO0440 0.88 -0.0 467,930 + -0.2 468,060 - -2.3 468,157 + -0.1 468,167 - -0.9 468,175 - +0.1 468,204 - -0.1 468,219 + +0.1 468,421 + +0.6 468,429 - +0.8 468,441 + +0.2 468,441 - -2.2 468,492 - +0.9 468,550 + +1.0 468,550 + -0.9 468,553 - +0.1 468,589 + purD SO0441 0.12 +1.3 468,636 - purD SO0441 0.16 +0.7 468,682 + purD SO0441 0.19 -0.6 468,779 + purD SO0441 0.27 -0.3 468,785 - purD SO0441 0.27 -1.4 468,899 + purD SO0441 0.36 -1.5 468,900 - purD SO0441 0.36 +0.7 468,915 - purD SO0441 0.37 -0.6 468,915 - purD SO0441 0.37 -0.9 468,951 + purD SO0441 0.40 +0.3 469,016 - purD SO0441 0.45 -0.7
Or see this region's nucleotide sequence