Strain Fitness in Shewanella oneidensis MR-1 around SO0183

Experiment: Cisplatin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0181 and SO0182 are separated by 111 nucleotidesSO0182 and SO0183 overlap by 4 nucleotidesSO0183 and SO0184 are separated by 85 nucleotidesSO0184 and SO0185 are separated by 39 nucleotides SO0181: SO0181 - hypothetical protein (NCBI ptt file), at 186,395 to 187,441 SO0181 SO0182: SO0182 - hypothetical protein (NCBI ptt file), at 187,553 to 187,840 SO0182 SO0183: SO0183 - acetyltransferase, GNAT family (NCBI ptt file), at 187,837 to 188,319 SO0183 SO0184: SO0184 - hypothetical microcystin dependent protein (NCBI ptt file), at 188,405 to 188,956 SO0184 SO0185: SO0185 - hypothetical microcystin dependent protein (NCBI ptt file), at 188,996 to 189,526 SO0185 Position (kb) 187 188 189Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 186.844 kb on - strand, within SO0181at 186.847 kb on + strand, within SO0181at 186.861 kb on - strand, within SO0181at 186.910 kb on + strand, within SO0181at 186.923 kb on - strand, within SO0181at 186.995 kb on + strand, within SO0181at 186.995 kb on - strand, within SO0181at 187.039 kb on - strand, within SO0181at 187.151 kb on + strand, within SO0181at 187.151 kb on - strand, within SO0181at 187.168 kb on + strand, within SO0181at 187.176 kb on + strand, within SO0181at 187.190 kb on - strand, within SO0181at 187.205 kb on - strand, within SO0181at 187.205 kb on - strand, within SO0181at 187.218 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.283 kb on - strand, within SO0181at 187.284 kb on - strand, within SO0181at 187.284 kb on - strand, within SO0181at 187.284 kb on - strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.342 kb on - strandat 187.347 kb on - strandat 187.350 kb on - strandat 187.350 kb on - strandat 187.399 kb on + strandat 187.407 kb on - strandat 187.623 kb on - strand, within SO0182at 187.658 kb on - strand, within SO0182at 187.662 kb on + strand, within SO0182at 187.672 kb on - strand, within SO0182at 187.673 kb on + strand, within SO0182at 187.689 kb on + strand, within SO0182at 187.689 kb on + strand, within SO0182at 187.689 kb on + strand, within SO0182at 187.697 kb on + strand, within SO0182at 187.697 kb on - strand, within SO0182at 187.697 kb on - strand, within SO0182at 187.699 kb on + strand, within SO0182at 187.699 kb on + strand, within SO0182at 187.707 kb on - strand, within SO0182at 187.707 kb on - strand, within SO0182at 187.707 kb on - strand, within SO0182at 187.730 kb on + strand, within SO0182at 187.730 kb on + strand, within SO0182at 187.730 kb on + strand, within SO0182at 187.738 kb on - strand, within SO0182at 187.738 kb on - strand, within SO0182at 187.756 kb on + strand, within SO0182at 187.760 kb on + strand, within SO0182at 187.835 kb on + strandat 187.835 kb on + strandat 187.835 kb on + strandat 187.835 kb on + strandat 187.858 kb on - strandat 187.860 kb on + strandat 187.860 kb on + strandat 187.860 kb on + strandat 187.867 kb on - strandat 187.867 kb on - strandat 187.867 kb on - strandat 187.867 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.917 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.924 kb on + strand, within SO0183at 187.927 kb on + strand, within SO0183at 187.927 kb on + strand, within SO0183at 187.927 kb on + strand, within SO0183at 187.927 kb on + strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.932 kb on - strandat 187.935 kb on - strand, within SO0183at 187.935 kb on - strand, within SO0183at 187.935 kb on - strand, within SO0183at 187.935 kb on - strand, within SO0183at 187.935 kb on - strand, within SO0183at 188.027 kb on + strand, within SO0183at 188.038 kb on + strand, within SO0183at 188.046 kb on - strand, within SO0183at 188.046 kb on - strand, within SO0183at 188.046 kb on - strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.138 kb on + strand, within SO0183at 188.139 kb on - strand, within SO0183at 188.139 kb on - strand, within SO0183at 188.142 kb on - strand, within SO0183at 188.142 kb on - strand, within SO0183at 188.142 kb on - strand, within SO0183at 188.144 kb on - strand, within SO0183at 188.147 kb on - strand, within SO0183at 188.151 kb on + strand, within SO0183at 188.157 kb on - strand, within SO0183at 188.160 kb on - strand, within SO0183at 188.203 kb on + strand, within SO0183at 188.234 kb on + strand, within SO0183at 188.242 kb on - strand, within SO0183at 188.243 kb on + strand, within SO0183at 188.265 kb on + strand, within SO0183at 188.290 kb on + strandat 188.315 kb on + strandat 188.323 kb on - strandat 188.323 kb on - strandat 188.323 kb on - strandat 188.329 kb on - strandat 188.331 kb on + strandat 188.388 kb on + strandat 188.388 kb on + strandat 188.388 kb on + strandat 188.396 kb on - strandat 188.442 kb on - strandat 188.442 kb on - strandat 188.453 kb on + strandat 188.453 kb on + strandat 188.453 kb on + strandat 188.459 kb on + strandat 188.461 kb on - strand, within SO0184at 188.478 kb on - strand, within SO0184at 188.525 kb on + strand, within SO0184at 188.528 kb on + strand, within SO0184at 188.533 kb on + strand, within SO0184at 188.541 kb on - strand, within SO0184at 188.564 kb on - strand, within SO0184at 188.701 kb on + strand, within SO0184at 188.701 kb on - strand, within SO0184at 188.737 kb on + strand, within SO0184at 188.744 kb on - strand, within SO0184at 188.744 kb on - strand, within SO0184at 188.745 kb on - strand, within SO0184at 188.746 kb on - strand, within SO0184at 188.766 kb on + strand, within SO0184at 188.771 kb on + strand, within SO0184at 188.779 kb on - strand, within SO0184at 188.813 kb on - strand, within SO0184at 188.815 kb on + strand, within SO0184at 188.815 kb on + strand, within SO0184at 188.823 kb on - strand, within SO0184at 188.823 kb on - strand, within SO0184at 188.828 kb on + strand, within SO0184at 188.933 kb on + strandat 188.933 kb on + strandat 188.934 kb on + strandat 188.979 kb on + strandat 189.047 kb on + strandat 189.055 kb on - strand, within SO0185at 189.064 kb on + strand, within SO0185at 189.148 kb on - strand, within SO0185at 189.150 kb on + strand, within SO0185at 189.194 kb on + strand, within SO0185at 189.196 kb on - strand, within SO0185at 189.197 kb on - strand, within SO0185at 189.206 kb on + strand, within SO0185at 189.209 kb on - strand, within SO0185

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.004 mg/ml
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186,844 - SO0181 0.43 -0.0
186,847 + SO0181 0.43 +1.1
186,861 - SO0181 0.45 +0.3
186,910 + SO0181 0.49 +0.6
186,923 - SO0181 0.50 -0.9
186,995 + SO0181 0.57 +0.3
186,995 - SO0181 0.57 +0.6
187,039 - SO0181 0.62 +0.2
187,151 + SO0181 0.72 -1.9
187,151 - SO0181 0.72 -1.4
187,168 + SO0181 0.74 +0.5
187,176 + SO0181 0.75 +0.2
187,190 - SO0181 0.76 -3.1
187,205 - SO0181 0.77 -0.8
187,205 - SO0181 0.77 -0.8
187,218 + SO0181 0.79 +1.6
187,276 + SO0181 0.84 +0.7
187,276 + SO0181 0.84 -1.4
187,276 + SO0181 0.84 -0.1
187,276 + SO0181 0.84 +0.5
187,276 + SO0181 0.84 -1.6
187,276 + SO0181 0.84 +0.7
187,276 + SO0181 0.84 +0.1
187,283 - SO0181 0.85 -0.0
187,284 - SO0181 0.85 -0.9
187,284 - SO0181 0.85 -0.7
187,284 - SO0181 0.85 -1.5
187,321 + SO0181 0.88 +0.5
187,321 + SO0181 0.88 -0.6
187,321 + SO0181 0.88 -1.3
187,321 + SO0181 0.88 -1.3
187,321 + SO0181 0.88 +0.5
187,342 - -1.1
187,347 - -2.1
187,350 - +0.5
187,350 - +1.4
187,399 + -0.5
187,407 - -0.5
187,623 - SO0182 0.24 +1.3
187,658 - SO0182 0.36 -0.4
187,662 + SO0182 0.38 +0.2
187,672 - SO0182 0.41 -0.7
187,673 + SO0182 0.42 -1.9
187,689 + SO0182 0.47 +0.4
187,689 + SO0182 0.47 -0.2
187,689 + SO0182 0.47 -0.1
187,697 + SO0182 0.50 -1.4
187,697 - SO0182 0.50 -0.7
187,697 - SO0182 0.50 +0.7
187,699 + SO0182 0.51 -1.2
187,699 + SO0182 0.51 -0.8
187,707 - SO0182 0.53 -0.9
187,707 - SO0182 0.53 -1.0
187,707 - SO0182 0.53 +1.8
187,730 + SO0182 0.61 -0.4
187,730 + SO0182 0.61 -1.5
187,730 + SO0182 0.61 -0.4
187,738 - SO0182 0.64 +0.6
187,738 - SO0182 0.64 -0.5
187,756 + SO0182 0.70 -0.6
187,760 + SO0182 0.72 -1.2
187,835 + -1.9
187,835 + +0.0
187,835 + +0.8
187,835 + +0.3
187,858 - -0.9
187,860 + +0.4
187,860 + -1.3
187,860 + +0.6
187,867 - -1.7
187,867 - +1.0
187,867 - -2.1
187,867 - +0.5
187,868 - +1.9
187,868 - -0.2
187,868 - +1.7
187,868 - +0.3
187,868 - -0.8
187,868 - -0.2
187,868 - -0.6
187,868 - +1.2
187,868 - +1.3
187,917 + SO0183 0.17 +0.0
187,922 + SO0183 0.18 -0.9
187,922 + SO0183 0.18 +1.5
187,922 + SO0183 0.18 -1.0
187,922 + SO0183 0.18 -0.1
187,922 + SO0183 0.18 +0.5
187,922 + SO0183 0.18 +0.7
187,922 + SO0183 0.18 -0.1
187,922 + SO0183 0.18 +1.0
187,922 + SO0183 0.18 -1.9
187,922 + SO0183 0.18 +0.7
187,924 + SO0183 0.18 -2.2
187,927 + SO0183 0.19 +0.6
187,927 + SO0183 0.19 +1.1
187,927 + SO0183 0.19 -0.6
187,927 + SO0183 0.19 +0.0
187,930 - SO0183 0.19 +0.7
187,930 - SO0183 0.19 +0.3
187,930 - SO0183 0.19 +1.0
187,930 - SO0183 0.19 -0.3
187,930 - SO0183 0.19 +1.3
187,930 - SO0183 0.19 +1.0
187,930 - SO0183 0.19 +0.8
187,930 - SO0183 0.19 +0.6
187,930 - SO0183 0.19 +1.6
187,932 - +2.4
187,935 - SO0183 0.20 -0.5
187,935 - SO0183 0.20 -0.6
187,935 - SO0183 0.20 +0.7
187,935 - SO0183 0.20 -0.4
187,935 - SO0183 0.20 -0.7
188,027 + SO0183 0.39 +0.7
188,038 + SO0183 0.42 -1.4
188,046 - SO0183 0.43 +0.4
188,046 - SO0183 0.43 -0.4
188,046 - SO0183 0.43 -0.1
188,129 + SO0183 0.60 +0.5
188,129 + SO0183 0.60 +0.5
188,129 + SO0183 0.60 -0.9
188,129 + SO0183 0.60 +0.1
188,129 + SO0183 0.60 -1.0
188,129 + SO0183 0.60 +0.3
188,129 + SO0183 0.60 +0.8
188,129 + SO0183 0.60 +0.7
188,129 + SO0183 0.60 +0.7
188,129 + SO0183 0.60 +0.3
188,129 + SO0183 0.60 -0.7
188,129 + SO0183 0.60 +0.6
188,129 + SO0183 0.60 +1.0
188,129 + SO0183 0.60 -0.1
188,129 + SO0183 0.60 +0.5
188,129 + SO0183 0.60 +0.8
188,129 + SO0183 0.60 +0.7
188,129 + SO0183 0.60 +0.2
188,129 + SO0183 0.60 +0.3
188,129 + SO0183 0.60 -0.6
188,137 - SO0183 0.62 -1.1
188,137 - SO0183 0.62 -1.2
188,137 - SO0183 0.62 +1.3
188,137 - SO0183 0.62 +0.5
188,137 - SO0183 0.62 +0.9
188,137 - SO0183 0.62 -2.2
188,137 - SO0183 0.62 -0.4
188,137 - SO0183 0.62 +1.1
188,137 - SO0183 0.62 +0.5
188,137 - SO0183 0.62 +0.3
188,138 + SO0183 0.62 -0.7
188,139 - SO0183 0.63 -0.3
188,139 - SO0183 0.63 -0.1
188,142 - SO0183 0.63 +0.4
188,142 - SO0183 0.63 -1.2
188,142 - SO0183 0.63 -0.5
188,144 - SO0183 0.64 +0.0
188,147 - SO0183 0.64 +1.0
188,151 + SO0183 0.65 +0.9
188,157 - SO0183 0.66 -0.3
188,160 - SO0183 0.67 -1.6
188,203 + SO0183 0.76 -0.7
188,234 + SO0183 0.82 +0.6
188,242 - SO0183 0.84 -2.7
188,243 + SO0183 0.84 -0.8
188,265 + SO0183 0.89 -2.2
188,290 + +0.2
188,315 + +0.6
188,323 - +0.1
188,323 - -0.1
188,323 - -1.4
188,329 - +0.0
188,331 + -0.5
188,388 + +0.6
188,388 + -2.3
188,388 + +0.9
188,396 - +0.2
188,442 - -2.6
188,442 - +0.5
188,453 + -2.0
188,453 + +0.1
188,453 + -0.9
188,459 + -0.2
188,461 - SO0184 0.10 -0.4
188,478 - SO0184 0.13 -0.9
188,525 + SO0184 0.22 -0.3
188,528 + SO0184 0.22 +1.7
188,533 + SO0184 0.23 -1.8
188,541 - SO0184 0.25 +0.4
188,564 - SO0184 0.29 +0.3
188,701 + SO0184 0.54 -2.4
188,701 - SO0184 0.54 -1.2
188,737 + SO0184 0.60 -3.3
188,744 - SO0184 0.61 +0.0
188,744 - SO0184 0.61 +0.3
188,745 - SO0184 0.62 +0.2
188,746 - SO0184 0.62 +0.1
188,766 + SO0184 0.65 -1.7
188,771 + SO0184 0.66 -1.5
188,779 - SO0184 0.68 -1.4
188,813 - SO0184 0.74 +0.2
188,815 + SO0184 0.74 -0.6
188,815 + SO0184 0.74 -1.1
188,823 - SO0184 0.76 +0.2
188,823 - SO0184 0.76 -0.1
188,828 + SO0184 0.77 -0.2
188,933 + +0.3
188,933 + -0.1
188,934 + +0.8
188,979 + -0.1
189,047 + -0.2
189,055 - SO0185 0.11 +0.5
189,064 + SO0185 0.13 -1.0
189,148 - SO0185 0.29 +0.6
189,150 + SO0185 0.29 -0.7
189,194 + SO0185 0.37 -1.5
189,196 - SO0185 0.38 -3.4
189,197 - SO0185 0.38 -1.6
189,206 + SO0185 0.40 +0.5
189,209 - SO0185 0.40 -0.8

Or see this region's nucleotide sequence