Strain Fitness in Shewanella oneidensis MR-1 around SO_2993

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
3,115,166	-		SO2992	0.73	+3.8
3,115,251	-				+3.3
3,115,256	+				+2.3
3,115,444	+				-0.2
3,115,506	+				+0.6
3,115,562	-				+0.0
3,115,584	+				+1.4
3,115,658	-				+1.3
3,115,679	+				+1.9
3,115,687	-				+1.5
3,115,697	-				+0.9
3,115,752	-				+0.0
3,115,776	-				+0.4
3,116,168	+				+3.3
3,116,173	+				+2.1
3,116,176	-				+2.0
3,116,183	+				+3.2
3,116,440	-		SO_2993	0.42	+3.5
3,116,440	-		SO_2993	0.42	+3.6
3,116,440	-		SO_2993	0.42	+2.4
3,116,534	+		SO_2993	0.54	+2.4
3,116,534	+				+1.4
3,116,691	+		SO_2993	0.75	+3.8
3,116,803	+				+2.2
3,116,912	+				+1.8
3,116,912	+				+3.8
3,116,912	+				+2.7
3,116,920	-				+0.3
3,116,964	+				+2.3
3,116,964	+				+3.4
3,116,964	+				+3.0
3,116,964	+				+1.9
3,116,964	+				+3.3
3,116,964	+				+5.6
3,116,964	+				+3.5
3,116,964	+				+2.1
3,116,964	+				+3.5
3,116,964	+				+2.9
3,116,964	+				+2.8
3,116,964	+				+0.7
3,116,964	+				+1.9
3,116,964	+				+1.1
3,116,972	-				+1.8
3,116,972	-				+1.5
3,116,972	-				+2.5
3,116,972	-				+3.4
3,116,972	-				+3.8
3,116,972	-				+3.1
3,116,972	-				+2.3
3,116,972	-				+3.4
3,116,972	-				+3.4
3,116,972	-				+2.7
3,116,972	-				+3.9
3,116,972	-				+3.4
3,117,013	+				+2.4
3,117,048	-		SO2995	0.18	+3.7
3,117,067	-		SO2995	0.26	+2.1
3,117,162	-		SO2995	0.66	+1.8
3,117,276	-				-0.2
3,117,277	-				+3.2
3,117,277	-				+1.9
3,117,279	+				+1.0
3,117,282	-				+2.0
3,117,299	+				+3.2
3,117,320	+				+3.6
3,117,320	+				+3.6
3,117,320	+				+2.4
3,117,328	-				+4.0
3,117,378	-				+1.6
3,117,425	-				+3.7
3,117,465	+		SO2997	0.18	+2.4
3,117,470	+		SO2997	0.20	+2.6
3,117,483	+		SO2997	0.24	+4.0
3,117,504	+		SO2997	0.31	+2.6
3,117,514	+		SO2997	0.34	+3.2
3,117,672	+		SO2997	0.86	+2.2
3,117,697	+				+3.9
3,117,794	-		SO2998	0.30	+2.5
3,117,864	-		SO2998	0.55	+3.8