Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_976 and HP15_977 are separated by 552 nucleotides HP15_977 and HP15_978 are separated by 205 nucleotides HP15_978 and HP15_979 are separated by 121 nucleotides
HP15_976: HP15_976 - acetyltransferase, GNAT family protein-like protein, at 985,905 to 986,369
_976
HP15_977: HP15_977 - hypothetical protein, at 986,922 to 987,056
_977
HP15_978: HP15_978 - major facilitator superfamily MFS_1, at 987,262 to 988,461
_978
HP15_979: HP15_979 - MOSC domain containing protein, at 988,583 to 989,380
_979
Position (kb) 987
988
989 Strain fitness (log2 ratio) -2
-1
0
1
2 at 986.337 kb on + strand at 986.410 kb on - strand at 986.494 kb on - strand at 986.594 kb on + strand at 986.602 kb on + strand at 986.602 kb on - strand at 986.701 kb on - strand at 986.706 kb on + strand at 986.714 kb on - strand at 986.895 kb on - strand at 986.938 kb on - strand, within HP15_977 at 987.056 kb on - strand at 987.183 kb on + strand at 987.191 kb on - strand at 987.330 kb on - strand at 987.372 kb on - strand at 987.372 kb on - strand at 987.477 kb on - strand, within HP15_978 at 987.516 kb on - strand, within HP15_978 at 987.539 kb on + strand, within HP15_978 at 987.549 kb on + strand, within HP15_978 at 987.549 kb on + strand, within HP15_978 at 987.556 kb on + strand, within HP15_978 at 987.581 kb on + strand, within HP15_978 at 987.621 kb on - strand, within HP15_978 at 987.656 kb on + strand, within HP15_978 at 987.674 kb on - strand, within HP15_978 at 987.701 kb on - strand, within HP15_978 at 987.724 kb on + strand, within HP15_978 at 987.724 kb on + strand, within HP15_978 at 987.732 kb on - strand, within HP15_978 at 987.942 kb on + strand, within HP15_978 at 987.962 kb on + strand, within HP15_978 at 987.996 kb on + strand, within HP15_978 at 988.115 kb on + strand, within HP15_978 at 988.142 kb on - strand, within HP15_978 at 988.199 kb on + strand, within HP15_978 at 988.204 kb on + strand, within HP15_978 at 988.204 kb on + strand, within HP15_978 at 988.207 kb on - strand, within HP15_978 at 988.267 kb on - strand, within HP15_978 at 988.267 kb on - strand, within HP15_978 at 988.334 kb on + strand, within HP15_978 at 988.352 kb on + strand at 988.399 kb on + strand at 988.399 kb on + strand at 988.435 kb on + strand at 988.454 kb on - strand at 988.454 kb on - strand at 988.565 kb on + strand at 988.677 kb on - strand, within HP15_979 at 988.729 kb on + strand, within HP15_979 at 988.764 kb on - strand, within HP15_979 at 989.000 kb on - strand, within HP15_979 at 989.021 kb on + strand, within HP15_979 at 989.260 kb on + strand, within HP15_979 at 989.303 kb on + strand at 989.389 kb on - strand at 989.399 kb on - strand at 989.415 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 986,337 + -0.1 986,410 - +0.9 986,494 - +0.3 986,594 + +1.2 986,602 + +1.4 986,602 - -0.4 986,701 - +1.7 986,706 + +0.0 986,714 - -0.5 986,895 - +1.3 986,938 - HP15_977 0.12 +0.3 987,056 - +1.9 987,183 + -0.6 987,191 - -1.4 987,330 - -0.4 987,372 - +2.1 987,372 - +1.5 987,477 - HP15_978 0.18 +1.8 987,516 - HP15_978 0.21 -0.4 987,539 + HP15_978 0.23 -1.0 987,549 + HP15_978 0.24 +0.7 987,549 + HP15_978 0.24 +2.1 987,556 + HP15_978 0.24 -0.6 987,581 + HP15_978 0.27 +2.0 987,621 - HP15_978 0.30 -0.5 987,656 + HP15_978 0.33 +1.4 987,674 - HP15_978 0.34 +1.7 987,701 - HP15_978 0.37 +1.0 987,724 + HP15_978 0.39 -1.0 987,724 + HP15_978 0.39 +0.9 987,732 - HP15_978 0.39 -1.8 987,942 + HP15_978 0.57 -1.3 987,962 + HP15_978 0.58 -1.3 987,996 + HP15_978 0.61 -0.4 988,115 + HP15_978 0.71 -0.2 988,142 - HP15_978 0.73 -1.0 988,199 + HP15_978 0.78 -0.7 988,204 + HP15_978 0.79 -0.6 988,204 + HP15_978 0.79 -1.2 988,207 - HP15_978 0.79 -0.4 988,267 - HP15_978 0.84 +0.0 988,267 - HP15_978 0.84 -0.1 988,334 + HP15_978 0.89 -0.3 988,352 + -0.7 988,399 + +0.3 988,399 + +0.8 988,435 + -0.1 988,454 - +1.2 988,454 - +1.1 988,565 + -0.6 988,677 - HP15_979 0.12 +1.8 988,729 + HP15_979 0.18 +1.3 988,764 - HP15_979 0.23 +0.1 989,000 - HP15_979 0.52 -0.1 989,021 + HP15_979 0.55 -0.6 989,260 + HP15_979 0.85 -0.3 989,303 + +0.2 989,389 - +1.6 989,399 - -0.4 989,415 + +1.0
Or see this region's nucleotide sequence