Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_854 and HP15_855 overlap by 1 nucleotides HP15_855 and HP15_856 are separated by 6 nucleotides HP15_856 and HP15_857 are separated by 138 nucleotides
HP15_854: HP15_854 - conserved hypothetical protein, secreted, at 871,348 to 872,208
_854
HP15_855: HP15_855 - M23 peptidase domain protein, at 872,208 to 873,176
_855
HP15_856: HP15_856 - UspA domain protein, at 873,183 to 873,602
_856
HP15_857: HP15_857 - sodium-dependent transporter family protein, at 873,741 to 875,123
_857
Position (kb) 873
874 Strain fitness (log2 ratio) -1
0
1
2 at 872.272 kb on + strand at 872.520 kb on + strand, within HP15_855 at 872.671 kb on - strand, within HP15_855 at 872.684 kb on + strand, within HP15_855 at 872.684 kb on + strand, within HP15_855 at 872.856 kb on - strand, within HP15_855 at 873.014 kb on + strand, within HP15_855 at 873.031 kb on + strand, within HP15_855 at 873.052 kb on + strand, within HP15_855 at 873.151 kb on + strand at 873.304 kb on - strand, within HP15_856 at 873.363 kb on + strand, within HP15_856 at 873.436 kb on - strand, within HP15_856 at 873.443 kb on + strand, within HP15_856 at 873.443 kb on + strand, within HP15_856 at 873.489 kb on + strand, within HP15_856 at 873.505 kb on + strand, within HP15_856 at 873.524 kb on + strand, within HP15_856 at 873.570 kb on - strand at 873.599 kb on + strand at 873.812 kb on + strand at 874.077 kb on + strand, within HP15_857 at 874.085 kb on - strand, within HP15_857 at 874.085 kb on - strand, within HP15_857 at 874.249 kb on - strand, within HP15_857 at 874.400 kb on + strand, within HP15_857 at 874.428 kb on + strand, within HP15_857 at 874.436 kb on - strand, within HP15_857 at 874.436 kb on - strand, within HP15_857 at 874.436 kb on - strand, within HP15_857 at 874.523 kb on - strand, within HP15_857
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 872,272 + -1.1 872,520 + HP15_855 0.32 -0.2 872,671 - HP15_855 0.48 -0.4 872,684 + HP15_855 0.49 +1.4 872,684 + HP15_855 0.49 +1.2 872,856 - HP15_855 0.67 -0.3 873,014 + HP15_855 0.83 +1.1 873,031 + HP15_855 0.85 +1.3 873,052 + HP15_855 0.87 -1.3 873,151 + -0.3 873,304 - HP15_856 0.29 +0.9 873,363 + HP15_856 0.43 -0.6 873,436 - HP15_856 0.60 +1.8 873,443 + HP15_856 0.62 +1.6 873,443 + HP15_856 0.62 +2.3 873,489 + HP15_856 0.73 +1.2 873,505 + HP15_856 0.77 +0.5 873,524 + HP15_856 0.81 +1.6 873,570 - +1.4 873,599 + +1.6 873,812 + -0.1 874,077 + HP15_857 0.24 -0.2 874,085 - HP15_857 0.25 +0.4 874,085 - HP15_857 0.25 +1.4 874,249 - HP15_857 0.37 +1.4 874,400 + HP15_857 0.48 -0.1 874,428 + HP15_857 0.50 -0.2 874,436 - HP15_857 0.50 +1.8 874,436 - HP15_857 0.50 +0.5 874,436 - HP15_857 0.50 +0.3 874,523 - HP15_857 0.57 -0.4
Or see this region's nucleotide sequence