Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_647 and HP15_648 are separated by 436 nucleotides HP15_648 and HP15_649 overlap by 10 nucleotides HP15_649 and HP15_650 overlap by 11 nucleotides HP15_650 and HP15_651 overlap by 1 nucleotides
HP15_647: HP15_647 - conserved hypothetical protein, secreted, at 669,924 to 670,652
_647
HP15_648: HP15_648 - phage late control D, at 671,089 to 672,087
_648
HP15_649: HP15_649 - phage tail protein X, at 672,078 to 672,290
_649
HP15_650: HP15_650 - phage P2 GpU, at 672,280 to 672,672
_650
HP15_651: HP15_651 - protein putative phage tail tape measure protein-like protein, at 672,672 to 674,426
_651
Position (kb) 671
672
673 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 670.220 kb on + strand, within HP15_647 at 670.293 kb on + strand, within HP15_647 at 670.363 kb on - strand, within HP15_647 at 670.378 kb on + strand, within HP15_647 at 670.386 kb on - strand, within HP15_647 at 670.405 kb on + strand, within HP15_647 at 670.423 kb on - strand, within HP15_647 at 670.448 kb on + strand, within HP15_647 at 670.499 kb on - strand, within HP15_647 at 670.516 kb on + strand, within HP15_647 at 670.519 kb on - strand, within HP15_647 at 670.519 kb on - strand, within HP15_647 at 670.524 kb on - strand, within HP15_647 at 670.595 kb on + strand at 670.595 kb on + strand at 670.654 kb on - strand at 670.663 kb on + strand at 670.857 kb on + strand at 670.932 kb on + strand at 670.962 kb on - strand at 671.158 kb on - strand at 671.326 kb on - strand, within HP15_648 at 671.372 kb on + strand, within HP15_648 at 671.374 kb on - strand, within HP15_648 at 671.518 kb on - strand, within HP15_648 at 671.580 kb on + strand, within HP15_648 at 671.588 kb on - strand, within HP15_648 at 671.590 kb on + strand, within HP15_648 at 671.598 kb on - strand, within HP15_648 at 671.652 kb on + strand, within HP15_648 at 671.683 kb on - strand, within HP15_648 at 671.685 kb on - strand, within HP15_648 at 671.764 kb on + strand, within HP15_648 at 671.811 kb on + strand, within HP15_648 at 671.850 kb on + strand, within HP15_648 at 671.917 kb on - strand, within HP15_648 at 671.981 kb on - strand, within HP15_648 at 672.097 kb on - strand at 672.122 kb on - strand, within HP15_649 at 672.163 kb on - strand, within HP15_649 at 672.242 kb on - strand, within HP15_649 at 672.357 kb on - strand, within HP15_650 at 672.392 kb on - strand, within HP15_650 at 672.416 kb on + strand, within HP15_650 at 672.416 kb on + strand, within HP15_650 at 672.458 kb on + strand, within HP15_650 at 672.458 kb on + strand, within HP15_650 at 672.466 kb on - strand, within HP15_650 at 672.546 kb on - strand, within HP15_650 at 672.553 kb on + strand, within HP15_650 at 672.558 kb on + strand, within HP15_650 at 672.561 kb on - strand, within HP15_650 at 672.561 kb on - strand, within HP15_650 at 672.561 kb on - strand, within HP15_650 at 672.576 kb on + strand, within HP15_650 at 672.581 kb on - strand, within HP15_650 at 672.610 kb on + strand, within HP15_650 at 672.701 kb on + strand at 672.793 kb on + strand at 672.860 kb on - strand, within HP15_651 at 672.877 kb on - strand, within HP15_651 at 673.049 kb on - strand, within HP15_651
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 670,220 + HP15_647 0.41 +2.2 670,293 + HP15_647 0.51 -1.0 670,363 - HP15_647 0.60 +2.4 670,378 + HP15_647 0.62 -0.2 670,386 - HP15_647 0.63 -1.0 670,405 + HP15_647 0.66 -0.5 670,423 - HP15_647 0.68 +1.0 670,448 + HP15_647 0.72 -0.9 670,499 - HP15_647 0.79 -0.5 670,516 + HP15_647 0.81 -0.5 670,519 - HP15_647 0.82 -0.2 670,519 - HP15_647 0.82 -0.3 670,524 - HP15_647 0.82 +1.7 670,595 + -0.6 670,595 + +1.8 670,654 - -0.2 670,663 + -0.6 670,857 + -0.2 670,932 + -3.0 670,962 - +1.9 671,158 - +0.1 671,326 - HP15_648 0.24 +1.8 671,372 + HP15_648 0.28 -0.2 671,374 - HP15_648 0.29 -1.0 671,518 - HP15_648 0.43 +1.7 671,580 + HP15_648 0.49 +0.5 671,588 - HP15_648 0.50 +1.7 671,590 + HP15_648 0.50 +0.3 671,598 - HP15_648 0.51 -0.7 671,652 + HP15_648 0.56 -0.7 671,683 - HP15_648 0.59 -0.9 671,685 - HP15_648 0.60 +1.8 671,764 + HP15_648 0.68 +1.9 671,811 + HP15_648 0.72 +1.9 671,850 + HP15_648 0.76 -0.3 671,917 - HP15_648 0.83 +0.1 671,981 - HP15_648 0.89 +1.9 672,097 - -0.7 672,122 - HP15_649 0.21 +2.4 672,163 - HP15_649 0.40 +0.7 672,242 - HP15_649 0.77 +0.2 672,357 - HP15_650 0.20 -0.3 672,392 - HP15_650 0.28 +1.1 672,416 + HP15_650 0.35 +0.6 672,416 + HP15_650 0.35 +0.2 672,458 + HP15_650 0.45 +1.4 672,458 + HP15_650 0.45 -1.0 672,466 - HP15_650 0.47 +0.3 672,546 - HP15_650 0.68 +0.4 672,553 + HP15_650 0.69 +0.2 672,558 + HP15_650 0.71 +1.8 672,561 - HP15_650 0.72 +1.5 672,561 - HP15_650 0.72 -0.2 672,561 - HP15_650 0.72 -1.6 672,576 + HP15_650 0.75 -0.3 672,581 - HP15_650 0.77 -0.2 672,610 + HP15_650 0.84 +1.7 672,701 + -0.3 672,793 + +0.1 672,860 - HP15_651 0.11 +0.3 672,877 - HP15_651 0.12 -0.8 673,049 - HP15_651 0.21 +1.9
Or see this region's nucleotide sequence