Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_590 and HP15_591 are separated by 147 nucleotides HP15_591 and HP15_592 are separated by 75 nucleotides HP15_592 and HP15_593 are separated by 127 nucleotides
HP15_590: HP15_590 - haloalkane dehalogenase, at 611,012 to 611,911
_590
HP15_591: HP15_591 - conserved hypothetical protein, at 612,059 to 612,307
_591
HP15_592: HP15_592 - conserved hypothetical protein, at 612,383 to 612,733
_592
HP15_593: HP15_593 - protein belonging to uncharacterized protein family UPF0118, at 612,861 to 613,976
_593
Position (kb) 612
613 Strain fitness (log2 ratio) -1
0
1
2 at 611.095 kb on - strand at 611.172 kb on - strand, within HP15_590 at 611.579 kb on + strand, within HP15_590 at 611.591 kb on - strand, within HP15_590 at 611.779 kb on - strand, within HP15_590 at 612.041 kb on - strand at 612.051 kb on - strand at 612.109 kb on - strand, within HP15_591 at 612.145 kb on - strand, within HP15_591 at 612.145 kb on - strand, within HP15_591 at 612.149 kb on + strand, within HP15_591 at 612.162 kb on + strand, within HP15_591 at 612.240 kb on + strand, within HP15_591 at 612.269 kb on - strand, within HP15_591 at 612.285 kb on - strand at 612.293 kb on - strand at 612.334 kb on - strand at 612.405 kb on + strand at 612.450 kb on - strand, within HP15_592 at 612.499 kb on + strand, within HP15_592 at 612.499 kb on + strand, within HP15_592 at 612.507 kb on - strand, within HP15_592 at 612.558 kb on + strand, within HP15_592 at 612.659 kb on + strand, within HP15_592 at 612.660 kb on + strand, within HP15_592 at 612.667 kb on - strand, within HP15_592 at 612.816 kb on - strand at 612.816 kb on - strand at 612.848 kb on - strand at 613.139 kb on + strand, within HP15_593 at 613.166 kb on + strand, within HP15_593 at 613.203 kb on + strand, within HP15_593 at 613.219 kb on - strand, within HP15_593 at 613.225 kb on - strand, within HP15_593
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 611,095 - +1.4 611,172 - HP15_590 0.18 +1.9 611,579 + HP15_590 0.63 +1.4 611,591 - HP15_590 0.64 +0.2 611,779 - HP15_590 0.85 +1.1 612,041 - +1.6 612,051 - +1.9 612,109 - HP15_591 0.20 -0.5 612,145 - HP15_591 0.35 +0.6 612,145 - HP15_591 0.35 +1.1 612,149 + HP15_591 0.36 -0.2 612,162 + HP15_591 0.41 -0.9 612,240 + HP15_591 0.73 -0.1 612,269 - HP15_591 0.84 -1.2 612,285 - -0.4 612,293 - -1.2 612,334 - +1.0 612,405 + +1.8 612,450 - HP15_592 0.19 +0.1 612,499 + HP15_592 0.33 +0.7 612,499 + HP15_592 0.33 +1.5 612,507 - HP15_592 0.35 +1.6 612,558 + HP15_592 0.50 +1.5 612,659 + HP15_592 0.79 +1.7 612,660 + HP15_592 0.79 -0.1 612,667 - HP15_592 0.81 +0.0 612,816 - -1.0 612,816 - +1.7 612,848 - -0.0 613,139 + HP15_593 0.25 -0.4 613,166 + HP15_593 0.27 -0.1 613,203 + HP15_593 0.31 +0.7 613,219 - HP15_593 0.32 -0.4 613,225 - HP15_593 0.33 +0.4
Or see this region's nucleotide sequence