Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05410 and PGA1_c05420 are separated by 172 nucleotides PGA1_c05420 and PGA1_c05430 are separated by 24 nucleotides
PGA1_c05410: PGA1_c05410 - hypothetical protein, at 548,586 to 549,695
_c05410
PGA1_c05420: PGA1_c05420 - glucokinase (EC 2.7.1.2) <small>(from data)</small>, at 549,868 to 550,818
_c05420
PGA1_c05430: PGA1_c05430 - Uncharacterized protein conserved in bacteria, at 550,843 to 554,508
_c05430
Position (kb) 549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 548.876 kb on + strand, within PGA1_c05410 at 548.944 kb on - strand, within PGA1_c05410 at 548.973 kb on - strand, within PGA1_c05410 at 548.989 kb on + strand, within PGA1_c05410 at 548.989 kb on + strand, within PGA1_c05410 at 549.059 kb on - strand, within PGA1_c05410 at 549.059 kb on - strand, within PGA1_c05410 at 549.069 kb on - strand, within PGA1_c05410 at 549.108 kb on - strand, within PGA1_c05410 at 549.108 kb on - strand, within PGA1_c05410 at 549.108 kb on - strand, within PGA1_c05410 at 549.113 kb on - strand, within PGA1_c05410 at 549.170 kb on + strand, within PGA1_c05410 at 549.185 kb on + strand, within PGA1_c05410 at 549.212 kb on + strand, within PGA1_c05410 at 549.216 kb on + strand, within PGA1_c05410 at 549.218 kb on + strand, within PGA1_c05410 at 549.224 kb on - strand, within PGA1_c05410 at 549.291 kb on - strand, within PGA1_c05410 at 549.333 kb on + strand, within PGA1_c05410 at 549.336 kb on - strand, within PGA1_c05410 at 549.341 kb on - strand, within PGA1_c05410 at 549.351 kb on - strand, within PGA1_c05410 at 549.439 kb on - strand, within PGA1_c05410 at 549.444 kb on + strand, within PGA1_c05410 at 549.464 kb on - strand, within PGA1_c05410 at 549.469 kb on - strand, within PGA1_c05410 at 549.543 kb on - strand, within PGA1_c05410 at 549.584 kb on - strand, within PGA1_c05410 at 549.590 kb on - strand at 549.648 kb on + strand at 549.654 kb on + strand at 549.656 kb on - strand at 549.659 kb on + strand at 549.659 kb on + strand at 549.659 kb on + strand at 549.659 kb on + strand at 549.667 kb on - strand at 549.688 kb on - strand at 549.714 kb on + strand at 549.714 kb on + strand at 549.714 kb on + strand at 549.714 kb on + strand at 549.714 kb on + strand at 549.714 kb on + strand at 549.722 kb on - strand at 549.722 kb on - strand at 549.724 kb on + strand at 549.756 kb on - strand at 549.763 kb on - strand at 549.832 kb on - strand at 550.121 kb on - strand, within PGA1_c05420 at 550.126 kb on - strand, within PGA1_c05420 at 550.235 kb on - strand, within PGA1_c05420 at 550.361 kb on + strand, within PGA1_c05420 at 550.677 kb on - strand, within PGA1_c05420 at 550.834 kb on - strand at 550.897 kb on - strand at 550.897 kb on - strand at 550.917 kb on - strand at 550.979 kb on + strand at 550.992 kb on - strand at 551.032 kb on - strand at 551.148 kb on + strand at 551.149 kb on + strand at 551.149 kb on + strand at 551.210 kb on - strand, within PGA1_c05430 at 551.267 kb on - strand, within PGA1_c05430 at 551.274 kb on - strand, within PGA1_c05430 at 551.292 kb on - strand, within PGA1_c05430 at 551.405 kb on + strand, within PGA1_c05430 at 551.408 kb on - strand, within PGA1_c05430 at 551.518 kb on + strand, within PGA1_c05430 at 551.672 kb on - strand, within PGA1_c05430 at 551.736 kb on + strand, within PGA1_c05430 at 551.744 kb on - strand, within PGA1_c05430
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 548,876 + PGA1_c05410 0.26 +0.6 548,944 - PGA1_c05410 0.32 -0.5 548,973 - PGA1_c05410 0.35 +0.9 548,989 + PGA1_c05410 0.36 +0.9 548,989 + PGA1_c05410 0.36 +1.0 549,059 - PGA1_c05410 0.43 +0.1 549,059 - PGA1_c05410 0.43 -0.5 549,069 - PGA1_c05410 0.44 -1.0 549,108 - PGA1_c05410 0.47 +0.2 549,108 - PGA1_c05410 0.47 -0.5 549,108 - PGA1_c05410 0.47 +0.6 549,113 - PGA1_c05410 0.47 -0.5 549,170 + PGA1_c05410 0.53 +0.5 549,185 + PGA1_c05410 0.54 -0.0 549,212 + PGA1_c05410 0.56 -0.5 549,216 + PGA1_c05410 0.57 -0.3 549,218 + PGA1_c05410 0.57 +0.7 549,224 - PGA1_c05410 0.57 +0.2 549,291 - PGA1_c05410 0.64 +0.4 549,333 + PGA1_c05410 0.67 -1.8 549,336 - PGA1_c05410 0.68 -0.2 549,341 - PGA1_c05410 0.68 +0.2 549,351 - PGA1_c05410 0.69 -1.8 549,439 - PGA1_c05410 0.77 +0.2 549,444 + PGA1_c05410 0.77 -1.0 549,464 - PGA1_c05410 0.79 -0.8 549,469 - PGA1_c05410 0.80 -0.6 549,543 - PGA1_c05410 0.86 +0.3 549,584 - PGA1_c05410 0.90 -1.4 549,590 - +0.8 549,648 + +1.7 549,654 + +0.9 549,656 - +0.8 549,659 + +0.0 549,659 + +0.6 549,659 + +1.1 549,659 + +0.5 549,667 - -0.9 549,688 - -0.7 549,714 + -1.6 549,714 + +0.2 549,714 + -1.5 549,714 + -1.1 549,714 + +0.5 549,714 + +0.8 549,722 - +0.4 549,722 - -1.2 549,724 + +0.8 549,756 - +0.9 549,763 - +0.9 549,832 - -1.8 550,121 - PGA1_c05420 0.27 -1.9 550,126 - PGA1_c05420 0.27 -2.0 550,235 - PGA1_c05420 0.39 -2.1 550,361 + PGA1_c05420 0.52 -0.7 550,677 - PGA1_c05420 0.85 -2.3 550,834 - -0.4 550,897 - -2.4 550,897 - -1.1 550,917 - -1.4 550,979 + -1.5 550,992 - -0.7 551,032 - -1.6 551,148 + -1.6 551,149 + -0.7 551,149 + -3.3 551,210 - PGA1_c05430 0.10 -0.8 551,267 - PGA1_c05430 0.12 -0.9 551,274 - PGA1_c05430 0.12 -0.7 551,292 - PGA1_c05430 0.12 -0.6 551,405 + PGA1_c05430 0.15 -2.2 551,408 - PGA1_c05430 0.15 +0.1 551,518 + PGA1_c05430 0.18 -2.2 551,672 - PGA1_c05430 0.23 -0.7 551,736 + PGA1_c05430 0.24 -1.4 551,744 - PGA1_c05430 0.25 -3.1
Or see this region's nucleotide sequence