Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_502 and HP15_503 are separated by 115 nucleotides HP15_503 and HP15_504 overlap by 8 nucleotides
HP15_502: HP15_502 - transcriptional regulator, LysR family protein, at 514,744 to 515,655
_502
HP15_503: HP15_503 - glutathione S-transferase protein, at 515,771 to 516,757
_503
HP15_504: HP15_504 - trans-hexaprenyltranstransferase, at 516,750 to 517,718
_504
Position (kb) 515
516
517 Strain fitness (log2 ratio) -2
-1
0
1
2 at 514.791 kb on - strand at 514.808 kb on + strand at 514.816 kb on - strand at 514.816 kb on - strand at 514.816 kb on - strand at 514.816 kb on - strand at 514.979 kb on - strand, within HP15_502 at 515.212 kb on + strand, within HP15_502 at 515.358 kb on - strand, within HP15_502 at 515.375 kb on + strand, within HP15_502 at 515.383 kb on - strand, within HP15_502 at 515.433 kb on + strand, within HP15_502 at 515.473 kb on - strand, within HP15_502 at 515.540 kb on + strand, within HP15_502 at 515.548 kb on - strand, within HP15_502 at 515.631 kb on + strand at 515.639 kb on - strand at 515.639 kb on - strand at 515.678 kb on + strand at 515.777 kb on - strand at 515.958 kb on + strand, within HP15_503 at 516.007 kb on - strand, within HP15_503 at 516.034 kb on - strand, within HP15_503 at 516.121 kb on + strand, within HP15_503 at 516.121 kb on + strand, within HP15_503 at 516.129 kb on - strand, within HP15_503 at 516.129 kb on - strand, within HP15_503 at 516.135 kb on - strand, within HP15_503 at 516.164 kb on - strand, within HP15_503 at 516.253 kb on + strand, within HP15_503 at 516.260 kb on - strand, within HP15_503 at 516.382 kb on + strand, within HP15_503 at 516.395 kb on - strand, within HP15_503 at 516.406 kb on - strand at 516.429 kb on + strand, within HP15_503 at 516.450 kb on - strand, within HP15_503 at 516.535 kb on - strand, within HP15_503 at 516.646 kb on + strand, within HP15_503
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 514,791 - -0.3 514,808 + -1.0 514,816 - -1.0 514,816 - -0.7 514,816 - +0.1 514,816 - +0.3 514,979 - HP15_502 0.26 -1.2 515,212 + HP15_502 0.51 -0.1 515,358 - HP15_502 0.67 -0.4 515,375 + HP15_502 0.69 +1.7 515,383 - HP15_502 0.70 -1.0 515,433 + HP15_502 0.76 -0.4 515,473 - HP15_502 0.80 -0.1 515,540 + HP15_502 0.87 +0.0 515,548 - HP15_502 0.88 +2.1 515,631 + +1.8 515,639 - +0.4 515,639 - -1.8 515,678 + -0.4 515,777 - -1.8 515,958 + HP15_503 0.19 +0.4 516,007 - HP15_503 0.24 +1.5 516,034 - HP15_503 0.27 -0.3 516,121 + HP15_503 0.35 -0.8 516,121 + HP15_503 0.35 +0.4 516,129 - HP15_503 0.36 +1.9 516,129 - HP15_503 0.36 +1.2 516,135 - HP15_503 0.37 -0.4 516,164 - HP15_503 0.40 -0.8 516,253 + HP15_503 0.49 -0.4 516,260 - HP15_503 0.50 +1.6 516,382 + HP15_503 0.62 -0.8 516,395 - HP15_503 0.63 +1.9 516,406 - +0.0 516,429 + HP15_503 0.67 +1.7 516,450 - HP15_503 0.69 -0.4 516,535 - HP15_503 0.77 +2.3 516,646 + HP15_503 0.89 -0.1
Or see this region's nucleotide sequence