Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00030 and PGA1_c00040 overlap by 4 nucleotides PGA1_c00040 and PGA1_c00050 are separated by 14 nucleotides PGA1_c00050 and PGA1_c00060 are separated by 100 nucleotides PGA1_c00060 and PGA1_c00070 are separated by 85 nucleotides
PGA1_c00030: PGA1_c00030 - DNA replication and repair protein RecF, at 3,057 to 4,154
_c00030
PGA1_c00040: PGA1_c00040 - putative LysE type translocator, at 4,151 to 4,771
_c00040
PGA1_c00050: PGA1_c00050 - putative transcriptional regulator, tetR family, at 4,786 to 5,385
_c00050
PGA1_c00060: PGA1_c00060 - putative NAD(P)H dehydrogenase (quinone), at 5,486 to 6,079
_c00060
PGA1_c00070: PGA1_c00070 - DNA gyrase subunit GyrB, at 6,165 to 8,582
_c00070
Position (kb) 4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3.799 kb on + strand, within PGA1_c00030 at 3.807 kb on - strand, within PGA1_c00030 at 3.807 kb on - strand, within PGA1_c00030 at 3.831 kb on - strand, within PGA1_c00030 at 3.848 kb on + strand, within PGA1_c00030 at 3.848 kb on + strand, within PGA1_c00030 at 3.897 kb on + strand, within PGA1_c00030 at 4.009 kb on - strand, within PGA1_c00030 at 4.035 kb on - strand, within PGA1_c00030 at 4.046 kb on + strand at 4.066 kb on + strand at 4.066 kb on + strand at 4.066 kb on + strand at 4.066 kb on + strand at 4.074 kb on - strand at 4.074 kb on - strand at 4.074 kb on - strand at 4.098 kb on + strand at 4.103 kb on + strand at 4.111 kb on + strand at 4.114 kb on - strand at 4.132 kb on + strand at 4.195 kb on - strand at 4.212 kb on - strand at 4.235 kb on - strand, within PGA1_c00040 at 4.290 kb on - strand, within PGA1_c00040 at 4.369 kb on + strand, within PGA1_c00040 at 4.402 kb on - strand, within PGA1_c00040 at 4.480 kb on + strand, within PGA1_c00040 at 4.522 kb on - strand, within PGA1_c00040 at 4.580 kb on + strand, within PGA1_c00040 at 4.580 kb on + strand, within PGA1_c00040 at 4.581 kb on - strand, within PGA1_c00040 at 4.656 kb on - strand, within PGA1_c00040 at 4.656 kb on - strand, within PGA1_c00040 at 4.666 kb on - strand, within PGA1_c00040 at 4.671 kb on - strand, within PGA1_c00040 at 4.777 kb on + strand at 4.780 kb on - strand at 4.780 kb on - strand at 4.785 kb on + strand at 4.825 kb on + strand at 4.858 kb on + strand, within PGA1_c00050 at 4.873 kb on + strand, within PGA1_c00050 at 4.913 kb on + strand, within PGA1_c00050 at 4.921 kb on - strand, within PGA1_c00050 at 4.921 kb on - strand, within PGA1_c00050 at 4.950 kb on + strand, within PGA1_c00050 at 4.971 kb on + strand, within PGA1_c00050 at 4.979 kb on - strand, within PGA1_c00050 at 5.031 kb on - strand, within PGA1_c00050 at 5.057 kb on - strand, within PGA1_c00050 at 5.068 kb on - strand, within PGA1_c00050 at 5.103 kb on + strand, within PGA1_c00050 at 5.148 kb on - strand, within PGA1_c00050 at 5.152 kb on + strand, within PGA1_c00050 at 5.304 kb on - strand, within PGA1_c00050 at 5.304 kb on - strand, within PGA1_c00050 at 5.367 kb on + strand at 5.367 kb on + strand at 5.373 kb on - strand at 5.373 kb on - strand at 5.375 kb on - strand at 5.409 kb on - strand at 5.472 kb on - strand at 5.480 kb on + strand at 5.482 kb on + strand at 5.490 kb on - strand at 5.490 kb on - strand at 5.525 kb on + strand at 5.578 kb on + strand, within PGA1_c00060 at 5.588 kb on + strand, within PGA1_c00060 at 5.594 kb on - strand, within PGA1_c00060 at 5.594 kb on - strand, within PGA1_c00060 at 5.601 kb on + strand, within PGA1_c00060 at 5.601 kb on + strand, within PGA1_c00060 at 5.707 kb on - strand, within PGA1_c00060 at 5.707 kb on - strand, within PGA1_c00060 at 5.741 kb on - strand, within PGA1_c00060 at 5.743 kb on - strand, within PGA1_c00060 at 5.764 kb on + strand, within PGA1_c00060 at 5.772 kb on - strand, within PGA1_c00060 at 5.876 kb on + strand, within PGA1_c00060 at 5.883 kb on + strand, within PGA1_c00060 at 5.883 kb on + strand, within PGA1_c00060 at 5.892 kb on + strand, within PGA1_c00060 at 5.894 kb on + strand, within PGA1_c00060 at 5.894 kb on + strand, within PGA1_c00060 at 5.904 kb on + strand, within PGA1_c00060 at 5.914 kb on + strand, within PGA1_c00060 at 5.949 kb on + strand, within PGA1_c00060 at 5.978 kb on - strand, within PGA1_c00060 at 5.994 kb on + strand, within PGA1_c00060 at 6.029 kb on + strand at 6.043 kb on + strand at 6.050 kb on + strand at 6.051 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 3,799 + PGA1_c00030 0.68 +0.5 3,807 - PGA1_c00030 0.68 +0.3 3,807 - PGA1_c00030 0.68 -0.4 3,831 - PGA1_c00030 0.70 -0.5 3,848 + PGA1_c00030 0.72 +0.8 3,848 + PGA1_c00030 0.72 +0.8 3,897 + PGA1_c00030 0.77 -0.6 4,009 - PGA1_c00030 0.87 -0.6 4,035 - PGA1_c00030 0.89 -0.8 4,046 + -1.4 4,066 + -0.8 4,066 + +0.1 4,066 + -0.9 4,066 + -0.5 4,074 - +0.1 4,074 - -0.5 4,074 - -0.5 4,098 + -0.9 4,103 + +0.4 4,111 + -0.4 4,114 - -0.2 4,132 + +0.2 4,195 - +0.7 4,212 - -0.4 4,235 - PGA1_c00040 0.14 -1.2 4,290 - PGA1_c00040 0.22 -2.9 4,369 + PGA1_c00040 0.35 +0.3 4,402 - PGA1_c00040 0.40 -0.3 4,480 + PGA1_c00040 0.53 +0.2 4,522 - PGA1_c00040 0.60 +0.6 4,580 + PGA1_c00040 0.69 -1.0 4,580 + PGA1_c00040 0.69 +0.7 4,581 - PGA1_c00040 0.69 +0.0 4,656 - PGA1_c00040 0.81 -2.9 4,656 - PGA1_c00040 0.81 +0.7 4,666 - PGA1_c00040 0.83 -0.8 4,671 - PGA1_c00040 0.84 +0.9 4,777 + -0.5 4,780 - +1.3 4,780 - +1.0 4,785 + +0.9 4,825 + -2.4 4,858 + PGA1_c00050 0.12 -1.5 4,873 + PGA1_c00050 0.14 -1.1 4,913 + PGA1_c00050 0.21 -1.8 4,921 - PGA1_c00050 0.23 -2.8 4,921 - PGA1_c00050 0.23 -1.3 4,950 + PGA1_c00050 0.27 -1.2 4,971 + PGA1_c00050 0.31 -0.5 4,979 - PGA1_c00050 0.32 -3.2 5,031 - PGA1_c00050 0.41 -2.3 5,057 - PGA1_c00050 0.45 -1.8 5,068 - PGA1_c00050 0.47 +0.5 5,103 + PGA1_c00050 0.53 +1.4 5,148 - PGA1_c00050 0.60 -0.0 5,152 + PGA1_c00050 0.61 -1.4 5,304 - PGA1_c00050 0.86 -2.8 5,304 - PGA1_c00050 0.86 -1.7 5,367 + -1.9 5,367 + -0.9 5,373 - -1.3 5,373 - -0.8 5,375 - -1.8 5,409 - +0.2 5,472 - +2.0 5,480 + -1.5 5,482 + -0.0 5,490 - +0.8 5,490 - -1.0 5,525 + -0.2 5,578 + PGA1_c00060 0.15 -0.4 5,588 + PGA1_c00060 0.17 -0.8 5,594 - PGA1_c00060 0.18 +1.3 5,594 - PGA1_c00060 0.18 -0.3 5,601 + PGA1_c00060 0.19 -0.2 5,601 + PGA1_c00060 0.19 +0.0 5,707 - PGA1_c00060 0.37 -0.0 5,707 - PGA1_c00060 0.37 +0.4 5,741 - PGA1_c00060 0.43 -1.6 5,743 - PGA1_c00060 0.43 -0.1 5,764 + PGA1_c00060 0.47 -0.2 5,772 - PGA1_c00060 0.48 +0.9 5,876 + PGA1_c00060 0.66 +0.1 5,883 + PGA1_c00060 0.67 -0.8 5,883 + PGA1_c00060 0.67 +0.9 5,892 + PGA1_c00060 0.68 +0.6 5,894 + PGA1_c00060 0.69 -0.8 5,894 + PGA1_c00060 0.69 -0.3 5,904 + PGA1_c00060 0.70 +0.0 5,914 + PGA1_c00060 0.72 +0.2 5,949 + PGA1_c00060 0.78 -0.1 5,978 - PGA1_c00060 0.83 -0.3 5,994 + PGA1_c00060 0.86 +0.1 6,029 + +1.6 6,043 + -0.9 6,050 + -0.4 6,051 - -1.0
Or see this region's nucleotide sequence