Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_484 and HP15_485 are separated by 216 nucleotides HP15_485 and HP15_486 are separated by 27 nucleotides HP15_486 and HP15_487 are separated by 252 nucleotides
HP15_484: HP15_484 - uroporphyrinogen decarboxylase, at 499,879 to 500,943
_484
HP15_485: HP15_485 - hypothetical protein, at 501,160 to 501,264
_485
HP15_486: HP15_486 - type IV pilus assembly PilZ, at 501,292 to 501,564
_486
HP15_487: HP15_487 - DNA repair protein RadA, at 501,817 to 503,193
_487
Position (kb) 501
502 Strain fitness (log2 ratio) -1
0
1
2 at 500.961 kb on + strand at 500.969 kb on - strand at 501.058 kb on - strand at 501.087 kb on - strand at 501.115 kb on - strand at 501.185 kb on + strand, within HP15_485 at 501.279 kb on - strand at 501.292 kb on - strand at 501.350 kb on + strand, within HP15_486 at 501.350 kb on + strand, within HP15_486 at 501.358 kb on - strand, within HP15_486 at 501.529 kb on + strand, within HP15_486 at 501.539 kb on - strand at 501.652 kb on - strand at 501.659 kb on + strand at 501.664 kb on + strand at 501.672 kb on - strand at 501.708 kb on - strand at 501.814 kb on + strand at 501.913 kb on - strand at 502.029 kb on - strand, within HP15_487 at 502.087 kb on + strand, within HP15_487 at 502.197 kb on + strand, within HP15_487 at 502.209 kb on + strand, within HP15_487
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 500,961 + +2.3 500,969 - -0.7 501,058 - +0.0 501,087 - -0.3 501,115 - +0.1 501,185 + HP15_485 0.24 -1.0 501,279 - -0.6 501,292 - +1.7 501,350 + HP15_486 0.21 -0.4 501,350 + HP15_486 0.21 +0.1 501,358 - HP15_486 0.24 +1.8 501,529 + HP15_486 0.87 +1.6 501,539 - +1.6 501,652 - +1.5 501,659 + +2.7 501,664 + +0.1 501,672 - +1.7 501,708 - +0.6 501,814 + -0.6 501,913 - +0.4 502,029 - HP15_487 0.15 +0.1 502,087 + HP15_487 0.20 -0.9 502,197 + HP15_487 0.28 +2.0 502,209 + HP15_487 0.28 +2.0
Or see this region's nucleotide sequence