Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04590 and PGA1_c04600 overlap by 4 nucleotides PGA1_c04600 and PGA1_c04610 are separated by 181 nucleotides PGA1_c04610 and PGA1_c04620 are separated by 187 nucleotides PGA1_c04620 and PGA1_c04630 are separated by 83 nucleotides
PGA1_c04590: PGA1_c04590 - putative threonine dehydratase, at 452,579 to 453,553
_c04590
PGA1_c04600: PGA1_c04600 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 453,550 to 454,239
_c04600
PGA1_c04610: PGA1_c04610 - haloacid dehalogenase, type II, at 454,421 to 455,107
_c04610
PGA1_c04620: PGA1_c04620 - peptidyl-prolyl cis-trans isomerase, FKBP-type, at 455,295 to 455,723
_c04620
PGA1_c04630: PGA1_c04630 - 2-nitropropane dioxygenase, at 455,807 to 456,901
_c04630
Position (kb) 454
455
456 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 453.432 kb on + strand, within PGA1_c04590 at 453.432 kb on + strand, within PGA1_c04590 at 453.432 kb on + strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.518 kb on + strand at 453.518 kb on + strand at 453.518 kb on + strand at 453.576 kb on + strand at 453.585 kb on + strand at 453.590 kb on + strand at 453.591 kb on + strand at 453.625 kb on + strand, within PGA1_c04600 at 453.634 kb on + strand, within PGA1_c04600 at 453.699 kb on - strand, within PGA1_c04600 at 453.699 kb on - strand, within PGA1_c04600 at 453.813 kb on - strand, within PGA1_c04600 at 453.823 kb on + strand, within PGA1_c04600 at 453.828 kb on + strand, within PGA1_c04600 at 453.942 kb on + strand, within PGA1_c04600 at 453.980 kb on + strand, within PGA1_c04600 at 454.081 kb on + strand, within PGA1_c04600 at 454.156 kb on - strand, within PGA1_c04600 at 454.165 kb on + strand, within PGA1_c04600 at 454.170 kb on + strand, within PGA1_c04600 at 454.208 kb on - strand at 454.208 kb on - strand at 454.220 kb on + strand at 454.291 kb on + strand at 454.358 kb on - strand at 454.362 kb on + strand at 454.370 kb on - strand at 454.371 kb on + strand at 454.371 kb on + strand at 454.381 kb on + strand at 454.381 kb on + strand at 454.389 kb on - strand at 454.413 kb on + strand at 454.421 kb on - strand at 454.421 kb on - strand at 454.451 kb on - strand at 454.451 kb on - strand at 454.456 kb on - strand at 454.457 kb on + strand at 454.463 kb on + strand at 454.484 kb on - strand at 454.622 kb on + strand, within PGA1_c04610 at 454.628 kb on + strand, within PGA1_c04610 at 454.630 kb on - strand, within PGA1_c04610 at 454.631 kb on - strand, within PGA1_c04610 at 454.631 kb on - strand, within PGA1_c04610 at 454.631 kb on - strand, within PGA1_c04610 at 454.716 kb on + strand, within PGA1_c04610 at 454.747 kb on + strand, within PGA1_c04610 at 454.752 kb on + strand, within PGA1_c04610 at 454.755 kb on - strand, within PGA1_c04610 at 454.755 kb on - strand, within PGA1_c04610 at 454.765 kb on - strand, within PGA1_c04610 at 454.765 kb on - strand, within PGA1_c04610 at 454.765 kb on - strand, within PGA1_c04610 at 454.770 kb on + strand, within PGA1_c04610 at 454.806 kb on - strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.857 kb on - strand, within PGA1_c04610 at 454.887 kb on - strand, within PGA1_c04610 at 454.897 kb on - strand, within PGA1_c04610 at 454.897 kb on - strand, within PGA1_c04610 at 454.929 kb on + strand, within PGA1_c04610 at 454.934 kb on + strand, within PGA1_c04610 at 454.942 kb on + strand, within PGA1_c04610 at 454.963 kb on - strand, within PGA1_c04610 at 454.982 kb on - strand, within PGA1_c04610 at 454.988 kb on - strand, within PGA1_c04610 at 455.011 kb on + strand, within PGA1_c04610 at 455.087 kb on + strand at 455.112 kb on - strand at 455.135 kb on - strand at 455.144 kb on - strand at 455.207 kb on + strand at 455.215 kb on - strand at 455.215 kb on - strand at 455.215 kb on - strand at 455.246 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.257 kb on - strand at 455.257 kb on - strand at 455.283 kb on + strand at 455.300 kb on - strand at 455.338 kb on - strand, within PGA1_c04620 at 455.369 kb on - strand, within PGA1_c04620 at 455.371 kb on + strand, within PGA1_c04620 at 455.379 kb on - strand, within PGA1_c04620 at 455.379 kb on - strand, within PGA1_c04620 at 455.379 kb on - strand, within PGA1_c04620 at 455.498 kb on - strand, within PGA1_c04620 at 455.498 kb on - strand, within PGA1_c04620 at 455.523 kb on + strand, within PGA1_c04620 at 455.641 kb on + strand, within PGA1_c04620 at 455.653 kb on + strand, within PGA1_c04620 at 455.655 kb on - strand, within PGA1_c04620 at 455.661 kb on - strand, within PGA1_c04620 at 455.661 kb on - strand, within PGA1_c04620 at 455.722 kb on - strand at 455.727 kb on - strand at 455.735 kb on - strand at 455.741 kb on - strand at 455.745 kb on - strand at 455.750 kb on - strand at 455.792 kb on + strand at 455.849 kb on + strand at 455.857 kb on - strand at 455.857 kb on - strand at 455.857 kb on - strand at 455.939 kb on - strand, within PGA1_c04630 at 455.961 kb on + strand, within PGA1_c04630 at 455.961 kb on + strand, within PGA1_c04630 at 455.961 kb on + strand, within PGA1_c04630 at 455.999 kb on + strand, within PGA1_c04630 at 456.016 kb on - strand, within PGA1_c04630 at 456.029 kb on - strand, within PGA1_c04630 at 456.060 kb on - strand, within PGA1_c04630 at 456.078 kb on + strand, within PGA1_c04630 at 456.096 kb on - strand, within PGA1_c04630 at 456.099 kb on + strand, within PGA1_c04630 at 456.107 kb on - strand, within PGA1_c04630 at 456.107 kb on - strand, within PGA1_c04630
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 453,432 + PGA1_c04590 0.87 -0.3 453,432 + PGA1_c04590 0.87 +1.0 453,432 + PGA1_c04590 0.87 +0.3 453,440 - PGA1_c04590 0.88 +0.2 453,440 - PGA1_c04590 0.88 +0.1 453,440 - PGA1_c04590 0.88 -0.3 453,440 - PGA1_c04590 0.88 +0.7 453,440 - PGA1_c04590 0.88 -0.4 453,518 + -0.3 453,518 + -1.6 453,518 + +0.2 453,576 + +0.1 453,585 + -2.5 453,590 + +1.3 453,591 + -1.0 453,625 + PGA1_c04600 0.11 -0.2 453,634 + PGA1_c04600 0.12 +0.8 453,699 - PGA1_c04600 0.22 -0.1 453,699 - PGA1_c04600 0.22 +0.2 453,813 - PGA1_c04600 0.38 +0.3 453,823 + PGA1_c04600 0.40 -0.4 453,828 + PGA1_c04600 0.40 +0.2 453,942 + PGA1_c04600 0.57 +0.4 453,980 + PGA1_c04600 0.62 -2.7 454,081 + PGA1_c04600 0.77 -1.0 454,156 - PGA1_c04600 0.88 -1.0 454,165 + PGA1_c04600 0.89 +0.2 454,170 + PGA1_c04600 0.90 -2.4 454,208 - -2.4 454,208 - +1.0 454,220 + -0.7 454,291 + +0.8 454,358 - +2.3 454,362 + +1.0 454,370 - +0.9 454,371 + +0.7 454,371 + +0.2 454,381 + +0.2 454,381 + +0.1 454,389 - +0.6 454,413 + +0.8 454,421 - -1.7 454,421 - -0.3 454,451 - -0.8 454,451 - +0.3 454,456 - +0.3 454,457 + +0.8 454,463 + +0.3 454,484 - +0.0 454,622 + PGA1_c04610 0.29 -1.7 454,628 + PGA1_c04610 0.30 +0.9 454,630 - PGA1_c04610 0.30 +2.0 454,631 - PGA1_c04610 0.31 +2.0 454,631 - PGA1_c04610 0.31 -1.6 454,631 - PGA1_c04610 0.31 +1.3 454,716 + PGA1_c04610 0.43 +0.7 454,747 + PGA1_c04610 0.47 +1.9 454,752 + PGA1_c04610 0.48 -0.5 454,755 - PGA1_c04610 0.49 -0.1 454,755 - PGA1_c04610 0.49 -1.5 454,765 - PGA1_c04610 0.50 +0.6 454,765 - PGA1_c04610 0.50 -0.8 454,765 - PGA1_c04610 0.50 +0.7 454,770 + PGA1_c04610 0.51 +0.9 454,806 - PGA1_c04610 0.56 -3.2 454,808 + PGA1_c04610 0.56 +0.8 454,808 + PGA1_c04610 0.56 -0.1 454,808 + PGA1_c04610 0.56 -0.0 454,808 + PGA1_c04610 0.56 -1.1 454,816 - PGA1_c04610 0.57 -0.5 454,816 - PGA1_c04610 0.57 +0.4 454,816 - PGA1_c04610 0.57 +0.5 454,816 - PGA1_c04610 0.57 -0.7 454,816 - PGA1_c04610 0.57 -0.3 454,816 - PGA1_c04610 0.57 +0.5 454,857 - PGA1_c04610 0.63 -0.7 454,887 - PGA1_c04610 0.68 +1.3 454,897 - PGA1_c04610 0.69 +2.1 454,897 - PGA1_c04610 0.69 +0.4 454,929 + PGA1_c04610 0.74 -0.3 454,934 + PGA1_c04610 0.75 +1.4 454,942 + PGA1_c04610 0.76 -1.5 454,963 - PGA1_c04610 0.79 +1.0 454,982 - PGA1_c04610 0.82 +0.9 454,988 - PGA1_c04610 0.83 +0.4 455,011 + PGA1_c04610 0.86 -1.9 455,087 + -0.4 455,112 - +1.0 455,135 - +0.3 455,144 - +0.1 455,207 + -2.7 455,215 - +2.0 455,215 - +0.7 455,215 - +0.0 455,246 + -1.2 455,247 + -0.7 455,247 + +0.4 455,247 + +0.7 455,247 + +0.3 455,247 + -0.0 455,247 + -2.4 455,247 + -0.6 455,247 + +0.2 455,247 + +0.6 455,247 + -0.2 455,247 + -1.2 455,247 + -1.0 455,247 + +0.2 455,247 + -0.5 455,247 + +0.1 455,255 - +0.1 455,255 - +0.4 455,255 - -0.9 455,255 - +0.8 455,255 - -2.0 455,255 - +0.3 455,255 - +0.8 455,255 - +0.3 455,257 - -0.5 455,257 - -0.1 455,283 + +0.5 455,300 - +0.8 455,338 - PGA1_c04620 0.10 +0.3 455,369 - PGA1_c04620 0.17 +0.2 455,371 + PGA1_c04620 0.18 -0.6 455,379 - PGA1_c04620 0.20 -0.6 455,379 - PGA1_c04620 0.20 +0.4 455,379 - PGA1_c04620 0.20 +0.1 455,498 - PGA1_c04620 0.47 -0.7 455,498 - PGA1_c04620 0.47 -0.2 455,523 + PGA1_c04620 0.53 +0.2 455,641 + PGA1_c04620 0.81 +0.3 455,653 + PGA1_c04620 0.83 -0.0 455,655 - PGA1_c04620 0.84 -0.1 455,661 - PGA1_c04620 0.85 -3.0 455,661 - PGA1_c04620 0.85 +1.4 455,722 - +0.4 455,727 - -0.8 455,735 - +0.0 455,741 - +0.7 455,745 - -2.3 455,750 - -0.4 455,792 + -0.2 455,849 + +1.0 455,857 - -0.1 455,857 - -2.0 455,857 - -0.2 455,939 - PGA1_c04630 0.12 -0.3 455,961 + PGA1_c04630 0.14 -0.2 455,961 + PGA1_c04630 0.14 -1.3 455,961 + PGA1_c04630 0.14 -0.1 455,999 + PGA1_c04630 0.18 +0.8 456,016 - PGA1_c04630 0.19 -0.1 456,029 - PGA1_c04630 0.20 -0.0 456,060 - PGA1_c04630 0.23 -1.3 456,078 + PGA1_c04630 0.25 -0.7 456,096 - PGA1_c04630 0.26 +2.0 456,099 + PGA1_c04630 0.27 -0.0 456,107 - PGA1_c04630 0.27 -1.3 456,107 - PGA1_c04630 0.27 -2.9
Or see this region's nucleotide sequence