Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_432 and HP15_433 are separated by 93 nucleotides HP15_433 and HP15_434 are separated by 27 nucleotides
HP15_432: HP15_432 - outer membrane protein (porin), at 432,095 to 433,102
_432
HP15_433: HP15_433 - adenylate cyclase, at 433,196 to 434,059
_433
HP15_434: HP15_434 - potassium channel protein, at 434,087 to 435,268
_434
Position (kb) 433
434
435 Strain fitness (log2 ratio) -2
-1
0
1
2 at 432.212 kb on + strand, within HP15_432 at 432.220 kb on - strand, within HP15_432 at 432.291 kb on + strand, within HP15_432 at 432.292 kb on - strand, within HP15_432 at 432.630 kb on - strand, within HP15_432 at 432.702 kb on + strand, within HP15_432 at 432.866 kb on + strand, within HP15_432 at 432.906 kb on - strand, within HP15_432 at 433.236 kb on + strand at 433.261 kb on - strand at 433.261 kb on - strand at 433.288 kb on + strand, within HP15_433 at 433.348 kb on + strand, within HP15_433 at 433.348 kb on + strand, within HP15_433 at 433.348 kb on + strand, within HP15_433 at 433.361 kb on - strand, within HP15_433 at 433.406 kb on - strand, within HP15_433 at 433.445 kb on + strand, within HP15_433 at 433.649 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.758 kb on + strand, within HP15_433 at 433.784 kb on + strand, within HP15_433 at 433.792 kb on - strand, within HP15_433 at 433.812 kb on - strand, within HP15_433 at 434.001 kb on + strand at 434.183 kb on + strand at 434.191 kb on - strand at 434.217 kb on - strand, within HP15_434 at 434.388 kb on - strand, within HP15_434 at 434.428 kb on - strand, within HP15_434 at 434.500 kb on + strand, within HP15_434 at 434.524 kb on + strand, within HP15_434 at 434.632 kb on - strand, within HP15_434 at 434.869 kb on + strand, within HP15_434 at 434.869 kb on + strand, within HP15_434 at 434.877 kb on - strand, within HP15_434 at 434.877 kb on - strand, within HP15_434
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 432,212 + HP15_432 0.12 -0.3 432,220 - HP15_432 0.12 +1.2 432,291 + HP15_432 0.19 -0.3 432,292 - HP15_432 0.20 -0.8 432,630 - HP15_432 0.53 -1.2 432,702 + HP15_432 0.60 +0.2 432,866 + HP15_432 0.76 +1.0 432,906 - HP15_432 0.80 -1.7 433,236 + +2.0 433,261 - -0.2 433,261 - +2.1 433,288 + HP15_433 0.11 -0.3 433,348 + HP15_433 0.18 -1.0 433,348 + HP15_433 0.18 +1.7 433,348 + HP15_433 0.18 -0.3 433,361 - HP15_433 0.19 +1.6 433,406 - HP15_433 0.24 -0.7 433,445 + HP15_433 0.29 -1.2 433,649 + HP15_433 0.52 +0.8 433,689 + HP15_433 0.57 -0.6 433,689 + HP15_433 0.57 -0.0 433,689 + HP15_433 0.57 -0.6 433,689 + HP15_433 0.57 -0.5 433,697 - HP15_433 0.58 +1.8 433,697 - HP15_433 0.58 -0.5 433,697 - HP15_433 0.58 -0.0 433,697 - HP15_433 0.58 +0.7 433,758 + HP15_433 0.65 -2.0 433,784 + HP15_433 0.68 -1.9 433,792 - HP15_433 0.69 -0.6 433,812 - HP15_433 0.71 -0.5 434,001 + +0.4 434,183 + -0.1 434,191 - +1.6 434,217 - HP15_434 0.11 -0.5 434,388 - HP15_434 0.25 -0.6 434,428 - HP15_434 0.29 -1.0 434,500 + HP15_434 0.35 +0.5 434,524 + HP15_434 0.37 -0.5 434,632 - HP15_434 0.46 +1.7 434,869 + HP15_434 0.66 -0.8 434,869 + HP15_434 0.66 -0.3 434,877 - HP15_434 0.67 +1.5 434,877 - HP15_434 0.67 +0.2
Or see this region's nucleotide sequence