Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00380

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00360 and PGA1_65p00370 are separated by 77 nucleotidesPGA1_65p00370 and PGA1_65p00380 overlap by 4 nucleotidesPGA1_65p00380 and PGA1_65p00390 are separated by 103 nucleotides PGA1_65p00360: PGA1_65p00360 - glycosyl transferase domain-containing protein, at 48,716 to 51,433 _65p00360 PGA1_65p00370: PGA1_65p00370 - putative glycosyl transferase, at 51,511 to 52,428 _65p00370 PGA1_65p00380: PGA1_65p00380 - hypothetical protein, at 52,425 to 53,744 _65p00380 PGA1_65p00390: PGA1_65p00390 - UDP-galactopyranose mutase Glf, at 53,848 to 55,011 _65p00390 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 51.481 kb on + strandat 51.557 kb on - strandat 51.665 kb on - strand, within PGA1_65p00370at 51.670 kb on - strand, within PGA1_65p00370at 51.675 kb on - strand, within PGA1_65p00370at 51.675 kb on - strand, within PGA1_65p00370at 51.736 kb on + strand, within PGA1_65p00370at 51.800 kb on - strand, within PGA1_65p00370at 51.817 kb on + strand, within PGA1_65p00370at 51.830 kb on + strand, within PGA1_65p00370at 51.913 kb on - strand, within PGA1_65p00370at 51.965 kb on - strand, within PGA1_65p00370at 51.990 kb on - strand, within PGA1_65p00370at 52.135 kb on - strand, within PGA1_65p00370at 52.135 kb on - strand, within PGA1_65p00370at 52.344 kb on - strandat 52.445 kb on - strandat 52.448 kb on - strandat 52.691 kb on - strand, within PGA1_65p00380at 53.197 kb on - strand, within PGA1_65p00380at 53.197 kb on - strand, within PGA1_65p00380at 53.198 kb on - strand, within PGA1_65p00380at 53.261 kb on + strand, within PGA1_65p00380at 53.602 kb on + strand, within PGA1_65p00380at 53.610 kb on - strand, within PGA1_65p00380at 53.610 kb on - strand, within PGA1_65p00380at 53.674 kb on + strandat 53.827 kb on - strandat 53.827 kb on - strandat 53.986 kb on + strand, within PGA1_65p00390at 53.993 kb on + strand, within PGA1_65p00390at 53.993 kb on + strand, within PGA1_65p00390at 54.114 kb on - strand, within PGA1_65p00390at 54.174 kb on - strand, within PGA1_65p00390at 54.319 kb on + strand, within PGA1_65p00390at 54.407 kb on + strand, within PGA1_65p00390at 54.415 kb on - strand, within PGA1_65p00390at 54.601 kb on + strand, within PGA1_65p00390at 54.631 kb on - strand, within PGA1_65p00390at 54.633 kb on + strand, within PGA1_65p00390at 54.641 kb on - strand, within PGA1_65p00390at 54.668 kb on - strand, within PGA1_65p00390

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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51,481 + +0.9
51,557 - +0.3
51,665 - PGA1_65p00370 0.17 -0.3
51,670 - PGA1_65p00370 0.17 +0.9
51,675 - PGA1_65p00370 0.18 +1.2
51,675 - PGA1_65p00370 0.18 -2.1
51,736 + PGA1_65p00370 0.25 +0.0
51,800 - PGA1_65p00370 0.31 +0.5
51,817 + PGA1_65p00370 0.33 +0.9
51,830 + PGA1_65p00370 0.35 +1.7
51,913 - PGA1_65p00370 0.44 +0.7
51,965 - PGA1_65p00370 0.49 +0.6
51,990 - PGA1_65p00370 0.52 -0.0
52,135 - PGA1_65p00370 0.68 +0.5
52,135 - PGA1_65p00370 0.68 -1.7
52,344 - +0.3
52,445 - +0.6
52,448 - +0.5
52,691 - PGA1_65p00380 0.20 -0.6
53,197 - PGA1_65p00380 0.58 -1.8
53,197 - PGA1_65p00380 0.58 -0.3
53,198 - PGA1_65p00380 0.59 -0.1
53,261 + PGA1_65p00380 0.63 -0.4
53,602 + PGA1_65p00380 0.89 -0.8
53,610 - PGA1_65p00380 0.90 -1.1
53,610 - PGA1_65p00380 0.90 -0.8
53,674 + +2.3
53,827 - -0.8
53,827 - +0.7
53,986 + PGA1_65p00390 0.12 -0.0
53,993 + PGA1_65p00390 0.12 -0.8
53,993 + PGA1_65p00390 0.12 +0.1
54,114 - PGA1_65p00390 0.23 +0.3
54,174 - PGA1_65p00390 0.28 -0.3
54,319 + PGA1_65p00390 0.40 -0.2
54,407 + PGA1_65p00390 0.48 +0.7
54,415 - PGA1_65p00390 0.49 +0.5
54,601 + PGA1_65p00390 0.65 -1.2
54,631 - PGA1_65p00390 0.67 +1.9
54,633 + PGA1_65p00390 0.67 -1.7
54,641 - PGA1_65p00390 0.68 -0.5
54,668 - PGA1_65p00390 0.70 -1.6

Or see this region's nucleotide sequence