Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3804 and HP15_3805 are separated by 10 nucleotides HP15_3805 and HP15_3806 are separated by 196 nucleotides HP15_3806 and HP15_3807 overlap by 4 nucleotides
HP15_3804: HP15_3804 - esterase, at 4,029,964 to 4,031,250
_3804
HP15_3805: HP15_3805 - conserved hypothetical protein, at 4,031,261 to 4,031,605
_3805
HP15_3806: HP15_3806 - conserved hypothetical protein, at 4,031,802 to 4,032,053
_3806
HP15_3807: HP15_3807 - conserved hypothetical protein, secreted, at 4,032,050 to 4,033,120
_3807
Position (kb)
4031
4032 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4030.337 kb on + strand, within HP15_3804 at 4030.497 kb on + strand, within HP15_3804 at 4030.505 kb on - strand, within HP15_3804 at 4030.537 kb on - strand, within HP15_3804 at 4030.590 kb on + strand, within HP15_3804 at 4030.673 kb on + strand, within HP15_3804 at 4030.717 kb on - strand, within HP15_3804 at 4030.744 kb on + strand, within HP15_3804 at 4030.950 kb on - strand, within HP15_3804 at 4031.019 kb on - strand, within HP15_3804 at 4031.059 kb on - strand, within HP15_3804 at 4031.091 kb on + strand, within HP15_3804 at 4031.091 kb on + strand, within HP15_3804 at 4031.116 kb on + strand, within HP15_3804 at 4031.175 kb on + strand at 4031.259 kb on + strand at 4031.267 kb on - strand at 4031.268 kb on + strand at 4031.276 kb on - strand at 4031.286 kb on + strand at 4031.291 kb on + strand at 4031.303 kb on + strand, within HP15_3805 at 4031.303 kb on + strand, within HP15_3805 at 4031.352 kb on - strand, within HP15_3805 at 4031.352 kb on - strand, within HP15_3805 at 4031.379 kb on + strand, within HP15_3805 at 4031.382 kb on - strand, within HP15_3805 at 4031.393 kb on - strand, within HP15_3805 at 4031.467 kb on + strand, within HP15_3805 at 4031.467 kb on + strand, within HP15_3805 at 4031.512 kb on + strand, within HP15_3805 at 4031.654 kb on - strand at 4031.678 kb on - strand at 4032.022 kb on + strand, within HP15_3806 at 4032.022 kb on + strand, within HP15_3806 at 4032.088 kb on - strand at 4032.263 kb on + strand, within HP15_3807 at 4032.293 kb on - strand, within HP15_3807 at 4032.303 kb on - strand, within HP15_3807 at 4032.358 kb on + strand, within HP15_3807
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 4,030,337 + HP15_3804 0.29 +0.9 4,030,497 + HP15_3804 0.41 -0.7 4,030,505 - HP15_3804 0.42 +2.7 4,030,537 - HP15_3804 0.45 +1.4 4,030,590 + HP15_3804 0.49 -1.2 4,030,673 + HP15_3804 0.55 -0.6 4,030,717 - HP15_3804 0.59 -0.3 4,030,744 + HP15_3804 0.61 -0.4 4,030,950 - HP15_3804 0.77 -0.2 4,031,019 - HP15_3804 0.82 -0.1 4,031,059 - HP15_3804 0.85 +0.1 4,031,091 + HP15_3804 0.88 -0.3 4,031,091 + HP15_3804 0.88 +0.2 4,031,116 + HP15_3804 0.90 -0.2 4,031,175 + -0.4 4,031,259 + -0.1 4,031,267 - -0.8 4,031,268 + +1.9 4,031,276 - -0.3 4,031,286 + -0.7 4,031,291 + +0.1 4,031,303 + HP15_3805 0.12 -0.4 4,031,303 + HP15_3805 0.12 -0.9 4,031,352 - HP15_3805 0.26 -2.0 4,031,352 - HP15_3805 0.26 +0.6 4,031,379 + HP15_3805 0.34 -1.6 4,031,382 - HP15_3805 0.35 -2.4 4,031,393 - HP15_3805 0.38 +1.5 4,031,467 + HP15_3805 0.60 -0.3 4,031,467 + HP15_3805 0.60 -2.6 4,031,512 + HP15_3805 0.73 +0.6 4,031,654 - -0.3 4,031,678 - -0.1 4,032,022 + HP15_3806 0.87 -0.7 4,032,022 + HP15_3806 0.87 -0.8 4,032,088 - -0.3 4,032,263 + HP15_3807 0.20 +0.1 4,032,293 - HP15_3807 0.23 +1.6 4,032,303 - HP15_3807 0.24 -0.5 4,032,358 + HP15_3807 0.29 +0.1
Or see this region's nucleotide sequence