Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_rRNA2 and HP15_rRNA3 are separated by 99 nucleotides HP15_rRNA3 and HP15_359 are separated by 318 nucleotides HP15_359 and HP15_360 are separated by 10 nucleotides
HP15_rRNA2: HP15_rRNA2 - 23S ribosomal RNA, at 356,596 to 359,487
_rRNA2
HP15_rRNA3: HP15_rRNA3 - 5S ribosomal RNA, at 359,587 to 359,700
_rRNA3
HP15_359: HP15_359 - conserved hypothetical protein, at 360,019 to 361,131
_359
HP15_360: HP15_360 - conserved hypothetical protein, secreted, at 361,142 to 362,221
_360
Position (kb) 360
361
362 Strain fitness (log2 ratio) -1
0
1
2 at 359.995 kb on - strand at 360.034 kb on + strand at 360.034 kb on + strand at 360.042 kb on - strand at 360.081 kb on + strand at 360.091 kb on + strand at 360.091 kb on + strand at 360.100 kb on - strand at 360.407 kb on + strand, within HP15_359 at 360.413 kb on - strand, within HP15_359 at 360.413 kb on - strand, within HP15_359 at 360.413 kb on - strand, within HP15_359 at 360.447 kb on - strand, within HP15_359 at 360.489 kb on - strand, within HP15_359 at 360.505 kb on - strand, within HP15_359 at 360.540 kb on - strand, within HP15_359 at 360.546 kb on + strand, within HP15_359 at 360.547 kb on - strand, within HP15_359 at 360.700 kb on - strand, within HP15_359 at 360.729 kb on + strand, within HP15_359 at 360.807 kb on + strand, within HP15_359 at 360.885 kb on + strand, within HP15_359 at 360.893 kb on - strand, within HP15_359 at 360.960 kb on + strand, within HP15_359 at 361.043 kb on + strand at 361.128 kb on - strand at 361.133 kb on - strand at 361.155 kb on + strand at 361.213 kb on - strand at 361.220 kb on + strand at 361.246 kb on - strand at 361.290 kb on + strand, within HP15_360 at 361.290 kb on + strand, within HP15_360 at 361.379 kb on + strand, within HP15_360 at 361.463 kb on - strand, within HP15_360 at 361.487 kb on + strand, within HP15_360 at 361.550 kb on + strand, within HP15_360 at 361.584 kb on - strand, within HP15_360 at 361.584 kb on - strand, within HP15_360 at 361.591 kb on + strand, within HP15_360 at 361.592 kb on + strand, within HP15_360 at 361.592 kb on + strand, within HP15_360 at 361.592 kb on + strand, within HP15_360 at 361.609 kb on + strand, within HP15_360 at 361.640 kb on - strand, within HP15_360 at 361.704 kb on - strand, within HP15_360 at 361.709 kb on - strand at 361.713 kb on + strand, within HP15_360 at 362.023 kb on + strand, within HP15_360 at 362.093 kb on + strand, within HP15_360
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 359,995 - +1.1 360,034 + -0.2 360,034 + -0.8 360,042 - -1.3 360,081 + -1.4 360,091 + +1.7 360,091 + +2.0 360,100 - -0.6 360,407 + HP15_359 0.35 -1.2 360,413 - HP15_359 0.35 -0.6 360,413 - HP15_359 0.35 +2.0 360,413 - HP15_359 0.35 -0.2 360,447 - HP15_359 0.38 +1.7 360,489 - HP15_359 0.42 +0.4 360,505 - HP15_359 0.44 -1.5 360,540 - HP15_359 0.47 -0.5 360,546 + HP15_359 0.47 +2.1 360,547 - HP15_359 0.47 -1.4 360,700 - HP15_359 0.61 +2.1 360,729 + HP15_359 0.64 +1.7 360,807 + HP15_359 0.71 +0.3 360,885 + HP15_359 0.78 +1.5 360,893 - HP15_359 0.79 -0.5 360,960 + HP15_359 0.85 +1.9 361,043 + +1.8 361,128 - +1.4 361,133 - +1.5 361,155 + +0.2 361,213 - -0.4 361,220 + -0.7 361,246 - +0.2 361,290 + HP15_360 0.14 +1.7 361,290 + HP15_360 0.14 -0.2 361,379 + HP15_360 0.22 -1.1 361,463 - HP15_360 0.30 +1.6 361,487 + HP15_360 0.32 +0.2 361,550 + HP15_360 0.38 +0.2 361,584 - HP15_360 0.41 +1.6 361,584 - HP15_360 0.41 +0.2 361,591 + HP15_360 0.42 -0.4 361,592 + HP15_360 0.42 -1.4 361,592 + HP15_360 0.42 +1.6 361,592 + HP15_360 0.42 -0.6 361,609 + HP15_360 0.43 -0.5 361,640 - HP15_360 0.46 +1.0 361,704 - HP15_360 0.52 +0.1 361,709 - +2.1 361,713 + HP15_360 0.53 -0.8 362,023 + HP15_360 0.82 -0.5 362,093 + HP15_360 0.88 +1.6
Or see this region's nucleotide sequence