Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c33510 and PGA1_c33520 are separated by 86 nucleotides PGA1_c33520 and PGA1_c33530 overlap by 4 nucleotides PGA1_c33530 and PGA1_c33540 are separated by 84 nucleotides
PGA1_c33510: PGA1_c33510 - tetraacyldisaccharide 4'-kinase LpxK, at 3,511,944 to 3,512,948
_c33510
PGA1_c33520: PGA1_c33520 - hypothetical protein, at 3,513,035 to 3,513,706
_c33520
PGA1_c33530: PGA1_c33530 - Uncharacterized protein conserved in bacteria, at 3,513,703 to 3,514,230
_c33530
PGA1_c33540: PGA1_c33540 - A/G-specific adenine glycosylase MutY, at 3,514,315 to 3,515,388
_c33540
Position (kb)
3513
3514 Strain fitness (log2 ratio)
-2
-1
0
1 at 3512.945 kb on - strand at 3513.051 kb on + strand at 3513.059 kb on - strand at 3513.081 kb on - strand at 3513.199 kb on - strand, within PGA1_c33520 at 3513.295 kb on - strand, within PGA1_c33520 at 3513.376 kb on + strand, within PGA1_c33520 at 3513.432 kb on + strand, within PGA1_c33520 at 3513.451 kb on + strand, within PGA1_c33520 at 3513.459 kb on - strand, within PGA1_c33520 at 3513.459 kb on - strand, within PGA1_c33520 at 3513.491 kb on + strand, within PGA1_c33520 at 3513.537 kb on + strand, within PGA1_c33520 at 3513.571 kb on + strand, within PGA1_c33520 at 3513.602 kb on - strand, within PGA1_c33520 at 3513.714 kb on - strand at 3513.714 kb on - strand at 3513.714 kb on - strand at 3514.251 kb on + strand at 3514.268 kb on + strand at 3514.268 kb on + strand at 3514.268 kb on + strand at 3514.268 kb on - strand at 3514.276 kb on - strand at 3514.342 kb on + strand at 3514.414 kb on - strand at 3514.423 kb on + strand, within PGA1_c33540 at 3514.431 kb on - strand, within PGA1_c33540 at 3514.454 kb on + strand, within PGA1_c33540 at 3514.462 kb on - strand, within PGA1_c33540 at 3514.462 kb on - strand, within PGA1_c33540 at 3514.483 kb on + strand, within PGA1_c33540 at 3514.508 kb on - strand, within PGA1_c33540 at 3514.529 kb on + strand, within PGA1_c33540 at 3514.647 kb on + strand, within PGA1_c33540 at 3514.647 kb on + strand, within PGA1_c33540 at 3514.647 kb on + strand, within PGA1_c33540 at 3514.647 kb on + strand, within PGA1_c33540 at 3514.671 kb on + strand, within PGA1_c33540 at 3514.671 kb on + strand, within PGA1_c33540 at 3514.673 kb on + strand, within PGA1_c33540
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 3,512,945 - -0.9 3,513,051 + -1.0 3,513,059 - +0.1 3,513,081 - -2.5 3,513,199 - PGA1_c33520 0.24 -2.4 3,513,295 - PGA1_c33520 0.39 -1.0 3,513,376 + PGA1_c33520 0.51 -2.4 3,513,432 + PGA1_c33520 0.59 -1.9 3,513,451 + PGA1_c33520 0.62 -1.5 3,513,459 - PGA1_c33520 0.63 -2.4 3,513,459 - PGA1_c33520 0.63 -2.1 3,513,491 + PGA1_c33520 0.68 -1.8 3,513,537 + PGA1_c33520 0.75 -2.6 3,513,571 + PGA1_c33520 0.80 -0.9 3,513,602 - PGA1_c33520 0.84 -1.6 3,513,714 - -1.2 3,513,714 - -2.4 3,513,714 - -0.1 3,514,251 + -1.6 3,514,268 + -2.4 3,514,268 + -0.2 3,514,268 + -2.0 3,514,268 - -2.2 3,514,276 - -1.2 3,514,342 + -0.7 3,514,414 - +0.0 3,514,423 + PGA1_c33540 0.10 +1.2 3,514,431 - PGA1_c33540 0.11 +0.1 3,514,454 + PGA1_c33540 0.13 +0.5 3,514,462 - PGA1_c33540 0.14 +0.1 3,514,462 - PGA1_c33540 0.14 -0.9 3,514,483 + PGA1_c33540 0.16 +0.5 3,514,508 - PGA1_c33540 0.18 -1.2 3,514,529 + PGA1_c33540 0.20 +1.1 3,514,647 + PGA1_c33540 0.31 +1.0 3,514,647 + PGA1_c33540 0.31 -1.0 3,514,647 + PGA1_c33540 0.31 +0.5 3,514,647 + PGA1_c33540 0.31 -0.2 3,514,671 + PGA1_c33540 0.33 -0.4 3,514,671 + PGA1_c33540 0.33 +0.3 3,514,673 + PGA1_c33540 0.33 -0.8
Or see this region's nucleotide sequence