Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33520

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c33510 and PGA1_c33520 are separated by 86 nucleotidesPGA1_c33520 and PGA1_c33530 overlap by 4 nucleotidesPGA1_c33530 and PGA1_c33540 are separated by 84 nucleotides PGA1_c33510: PGA1_c33510 - tetraacyldisaccharide 4'-kinase LpxK, at 3,511,944 to 3,512,948 _c33510 PGA1_c33520: PGA1_c33520 - hypothetical protein, at 3,513,035 to 3,513,706 _c33520 PGA1_c33530: PGA1_c33530 - Uncharacterized protein conserved in bacteria, at 3,513,703 to 3,514,230 _c33530 PGA1_c33540: PGA1_c33540 - A/G-specific adenine glycosylase MutY, at 3,514,315 to 3,515,388 _c33540 Position (kb) 3513 3514Strain fitness (log2 ratio) -2 -1 0 1at 3512.945 kb on - strandat 3513.051 kb on + strandat 3513.059 kb on - strandat 3513.081 kb on - strandat 3513.199 kb on - strand, within PGA1_c33520at 3513.295 kb on - strand, within PGA1_c33520at 3513.376 kb on + strand, within PGA1_c33520at 3513.432 kb on + strand, within PGA1_c33520at 3513.451 kb on + strand, within PGA1_c33520at 3513.459 kb on - strand, within PGA1_c33520at 3513.459 kb on - strand, within PGA1_c33520at 3513.491 kb on + strand, within PGA1_c33520at 3513.537 kb on + strand, within PGA1_c33520at 3513.571 kb on + strand, within PGA1_c33520at 3513.602 kb on - strand, within PGA1_c33520at 3513.714 kb on - strandat 3513.714 kb on - strandat 3513.714 kb on - strandat 3514.251 kb on + strandat 3514.268 kb on + strandat 3514.268 kb on + strandat 3514.268 kb on + strandat 3514.268 kb on - strandat 3514.276 kb on - strandat 3514.342 kb on + strandat 3514.414 kb on - strandat 3514.423 kb on + strand, within PGA1_c33540at 3514.431 kb on - strand, within PGA1_c33540at 3514.454 kb on + strand, within PGA1_c33540at 3514.462 kb on - strand, within PGA1_c33540at 3514.462 kb on - strand, within PGA1_c33540at 3514.483 kb on + strand, within PGA1_c33540at 3514.508 kb on - strand, within PGA1_c33540at 3514.529 kb on + strand, within PGA1_c33540at 3514.647 kb on + strand, within PGA1_c33540at 3514.647 kb on + strand, within PGA1_c33540at 3514.647 kb on + strand, within PGA1_c33540at 3514.647 kb on + strand, within PGA1_c33540at 3514.671 kb on + strand, within PGA1_c33540at 3514.671 kb on + strand, within PGA1_c33540at 3514.673 kb on + strand, within PGA1_c33540

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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3,512,945 - -0.9
3,513,051 + -1.0
3,513,059 - +0.1
3,513,081 - -2.5
3,513,199 - PGA1_c33520 0.24 -2.4
3,513,295 - PGA1_c33520 0.39 -1.0
3,513,376 + PGA1_c33520 0.51 -2.4
3,513,432 + PGA1_c33520 0.59 -1.9
3,513,451 + PGA1_c33520 0.62 -1.5
3,513,459 - PGA1_c33520 0.63 -2.4
3,513,459 - PGA1_c33520 0.63 -2.1
3,513,491 + PGA1_c33520 0.68 -1.8
3,513,537 + PGA1_c33520 0.75 -2.6
3,513,571 + PGA1_c33520 0.80 -0.9
3,513,602 - PGA1_c33520 0.84 -1.6
3,513,714 - -1.2
3,513,714 - -2.4
3,513,714 - -0.1
3,514,251 + -1.6
3,514,268 + -2.4
3,514,268 + -0.2
3,514,268 + -2.0
3,514,268 - -2.2
3,514,276 - -1.2
3,514,342 + -0.7
3,514,414 - +0.0
3,514,423 + PGA1_c33540 0.10 +1.2
3,514,431 - PGA1_c33540 0.11 +0.1
3,514,454 + PGA1_c33540 0.13 +0.5
3,514,462 - PGA1_c33540 0.14 +0.1
3,514,462 - PGA1_c33540 0.14 -0.9
3,514,483 + PGA1_c33540 0.16 +0.5
3,514,508 - PGA1_c33540 0.18 -1.2
3,514,529 + PGA1_c33540 0.20 +1.1
3,514,647 + PGA1_c33540 0.31 +1.0
3,514,647 + PGA1_c33540 0.31 -1.0
3,514,647 + PGA1_c33540 0.31 +0.5
3,514,647 + PGA1_c33540 0.31 -0.2
3,514,671 + PGA1_c33540 0.33 -0.4
3,514,671 + PGA1_c33540 0.33 +0.3
3,514,673 + PGA1_c33540 0.33 -0.8

Or see this region's nucleotide sequence