Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02810

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02790 and PGA1_c02800 are separated by 80 nucleotidesPGA1_c02800 and PGA1_c02810 are separated by 43 nucleotidesPGA1_c02810 and PGA1_c02820 are separated by 9 nucleotidesPGA1_c02820 and PGA1_c02830 are separated by 195 nucleotides PGA1_c02790: PGA1_c02790 - putative carboxy-terminal-processing protease, at 268,343 to 269,686 _c02790 PGA1_c02800: PGA1_c02800 - putative transcriptional regulator, AraC family, at 269,767 to 270,639 _c02800 PGA1_c02810: PGA1_c02810 - P-hydroxybenzoate hydroxylase PobA, at 270,683 to 271,909 _c02810 PGA1_c02820: PGA1_c02820 - putative transcriptional regulator, AraC family, at 271,919 to 272,575 _c02820 PGA1_c02830: PGA1_c02830 - ABC transporter, ATP-binding protein, at 272,771 to 273,700 _c02830 Position (kb) 270 271 272Strain fitness (log2 ratio) -2 -1 0 1 2at 269.692 kb on + strandat 269.693 kb on + strandat 269.698 kb on + strandat 269.698 kb on + strandat 269.701 kb on - strandat 269.753 kb on + strandat 269.770 kb on - strandat 269.851 kb on + strandat 270.009 kb on - strand, within PGA1_c02800at 270.107 kb on - strand, within PGA1_c02800at 270.115 kb on - strand, within PGA1_c02800at 270.140 kb on + strand, within PGA1_c02800at 270.140 kb on + strand, within PGA1_c02800at 270.140 kb on + strand, within PGA1_c02800at 270.148 kb on - strand, within PGA1_c02800at 270.148 kb on - strand, within PGA1_c02800at 270.148 kb on - strand, within PGA1_c02800at 270.158 kb on - strand, within PGA1_c02800at 270.189 kb on + strand, within PGA1_c02800at 270.189 kb on + strand, within PGA1_c02800at 270.197 kb on - strand, within PGA1_c02800at 270.197 kb on - strand, within PGA1_c02800at 270.260 kb on + strand, within PGA1_c02800at 270.294 kb on - strand, within PGA1_c02800at 270.294 kb on - strand, within PGA1_c02800at 270.370 kb on - strand, within PGA1_c02800at 270.463 kb on - strand, within PGA1_c02800at 270.532 kb on + strand, within PGA1_c02800at 270.606 kb on + strandat 270.606 kb on + strandat 270.617 kb on + strandat 270.632 kb on - strandat 270.725 kb on - strandat 270.733 kb on + strandat 270.741 kb on - strandat 270.741 kb on - strandat 270.771 kb on - strandat 270.785 kb on - strandat 270.839 kb on + strand, within PGA1_c02810at 270.883 kb on - strand, within PGA1_c02810at 270.989 kb on - strand, within PGA1_c02810at 270.993 kb on - strand, within PGA1_c02810at 271.016 kb on - strand, within PGA1_c02810at 271.016 kb on - strand, within PGA1_c02810at 271.023 kb on + strand, within PGA1_c02810at 271.122 kb on + strand, within PGA1_c02810at 271.144 kb on + strand, within PGA1_c02810at 271.144 kb on + strand, within PGA1_c02810at 271.151 kb on - strand, within PGA1_c02810at 271.152 kb on - strand, within PGA1_c02810at 271.168 kb on + strand, within PGA1_c02810at 271.223 kb on - strand, within PGA1_c02810at 271.273 kb on + strand, within PGA1_c02810at 271.281 kb on - strand, within PGA1_c02810at 271.282 kb on - strand, within PGA1_c02810at 271.290 kb on + strand, within PGA1_c02810at 271.303 kb on + strand, within PGA1_c02810at 271.309 kb on + strand, within PGA1_c02810at 271.385 kb on + strand, within PGA1_c02810at 271.390 kb on - strand, within PGA1_c02810at 271.452 kb on + strand, within PGA1_c02810at 271.489 kb on + strand, within PGA1_c02810at 271.496 kb on + strand, within PGA1_c02810at 271.504 kb on - strand, within PGA1_c02810at 271.504 kb on - strand, within PGA1_c02810at 271.618 kb on - strand, within PGA1_c02810at 271.670 kb on + strand, within PGA1_c02810at 271.690 kb on + strand, within PGA1_c02810at 271.692 kb on - strand, within PGA1_c02810at 271.700 kb on - strand, within PGA1_c02810at 271.706 kb on + strand, within PGA1_c02810at 271.794 kb on + strandat 271.835 kb on + strandat 271.835 kb on + strandat 271.835 kb on + strandat 271.843 kb on - strandat 271.843 kb on - strandat 271.870 kb on + strandat 271.873 kb on - strandat 271.895 kb on + strandat 271.903 kb on + strandat 271.918 kb on - strandat 272.044 kb on + strand, within PGA1_c02820at 272.052 kb on - strand, within PGA1_c02820at 272.052 kb on - strand, within PGA1_c02820at 272.133 kb on - strand, within PGA1_c02820at 272.133 kb on - strand, within PGA1_c02820at 272.150 kb on + strand, within PGA1_c02820at 272.158 kb on - strand, within PGA1_c02820at 272.158 kb on - strand, within PGA1_c02820at 272.158 kb on - strand, within PGA1_c02820at 272.158 kb on - strand, within PGA1_c02820at 272.160 kb on + strand, within PGA1_c02820at 272.160 kb on + strand, within PGA1_c02820at 272.168 kb on - strand, within PGA1_c02820at 272.168 kb on - strand, within PGA1_c02820at 272.168 kb on - strand, within PGA1_c02820at 272.195 kb on - strand, within PGA1_c02820at 272.254 kb on - strand, within PGA1_c02820at 272.290 kb on + strand, within PGA1_c02820at 272.300 kb on + strand, within PGA1_c02820at 272.310 kb on - strand, within PGA1_c02820at 272.339 kb on - strand, within PGA1_c02820at 272.404 kb on + strand, within PGA1_c02820at 272.404 kb on + strand, within PGA1_c02820at 272.412 kb on - strand, within PGA1_c02820at 272.412 kb on - strand, within PGA1_c02820at 272.412 kb on - strand, within PGA1_c02820at 272.414 kb on + strand, within PGA1_c02820at 272.414 kb on + strand, within PGA1_c02820at 272.414 kb on + strand, within PGA1_c02820at 272.422 kb on - strand, within PGA1_c02820at 272.428 kb on + strand, within PGA1_c02820at 272.443 kb on - strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.493 kb on + strand, within PGA1_c02820at 272.537 kb on + strandat 272.664 kb on - strandat 272.674 kb on + strandat 272.674 kb on + strandat 272.674 kb on + strandat 272.682 kb on - strandat 272.682 kb on - strandat 272.716 kb on + strandat 272.716 kb on + strandat 272.716 kb on + strandat 272.722 kb on + strandat 272.724 kb on - strandat 272.724 kb on - strandat 272.727 kb on + strandat 272.727 kb on + strandat 272.732 kb on + strandat 272.735 kb on - strandat 272.742 kb on + strandat 272.745 kb on - strandat 272.788 kb on - strandat 272.820 kb on + strandat 272.820 kb on + strandat 272.828 kb on - strandat 272.830 kb on + strandat 272.830 kb on + strandat 272.838 kb on - strandat 272.838 kb on - strandat 272.850 kb on + strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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269,692 + +0.7
269,693 + -0.1
269,698 + -0.1
269,698 + +0.1
269,701 - -0.3
269,753 + -0.8
269,770 - +0.6
269,851 + -0.7
270,009 - PGA1_c02800 0.28 +0.7
270,107 - PGA1_c02800 0.39 -1.2
270,115 - PGA1_c02800 0.40 +0.4
270,140 + PGA1_c02800 0.43 -1.0
270,140 + PGA1_c02800 0.43 +0.9
270,140 + PGA1_c02800 0.43 -1.2
270,148 - PGA1_c02800 0.44 +1.0
270,148 - PGA1_c02800 0.44 -0.8
270,148 - PGA1_c02800 0.44 +0.5
270,158 - PGA1_c02800 0.45 +0.3
270,189 + PGA1_c02800 0.48 -0.6
270,189 + PGA1_c02800 0.48 +0.9
270,197 - PGA1_c02800 0.49 +0.0
270,197 - PGA1_c02800 0.49 -0.8
270,260 + PGA1_c02800 0.56 +1.5
270,294 - PGA1_c02800 0.60 +0.2
270,294 - PGA1_c02800 0.60 +1.4
270,370 - PGA1_c02800 0.69 +0.1
270,463 - PGA1_c02800 0.80 -0.8
270,532 + PGA1_c02800 0.88 -0.5
270,606 + -1.0
270,606 + +0.6
270,617 + +0.1
270,632 - -0.3
270,725 - +0.7
270,733 + -0.9
270,741 - -0.4
270,741 - -0.8
270,771 - +0.5
270,785 - -0.2
270,839 + PGA1_c02810 0.13 +1.8
270,883 - PGA1_c02810 0.16 +1.3
270,989 - PGA1_c02810 0.25 -0.7
270,993 - PGA1_c02810 0.25 +0.1
271,016 - PGA1_c02810 0.27 -1.4
271,016 - PGA1_c02810 0.27 +0.5
271,023 + PGA1_c02810 0.28 +0.1
271,122 + PGA1_c02810 0.36 +0.9
271,144 + PGA1_c02810 0.38 -0.1
271,144 + PGA1_c02810 0.38 +0.6
271,151 - PGA1_c02810 0.38 -2.5
271,152 - PGA1_c02810 0.38 -0.5
271,168 + PGA1_c02810 0.40 +0.3
271,223 - PGA1_c02810 0.44 +0.3
271,273 + PGA1_c02810 0.48 -0.0
271,281 - PGA1_c02810 0.49 +0.1
271,282 - PGA1_c02810 0.49 -1.4
271,290 + PGA1_c02810 0.49 +1.4
271,303 + PGA1_c02810 0.51 -0.8
271,309 + PGA1_c02810 0.51 +0.8
271,385 + PGA1_c02810 0.57 -0.2
271,390 - PGA1_c02810 0.58 -0.8
271,452 + PGA1_c02810 0.63 +0.0
271,489 + PGA1_c02810 0.66 -0.0
271,496 + PGA1_c02810 0.66 +0.7
271,504 - PGA1_c02810 0.67 +0.2
271,504 - PGA1_c02810 0.67 +0.9
271,618 - PGA1_c02810 0.76 -0.0
271,670 + PGA1_c02810 0.80 +0.1
271,690 + PGA1_c02810 0.82 +1.6
271,692 - PGA1_c02810 0.82 +0.0
271,700 - PGA1_c02810 0.83 +0.1
271,706 + PGA1_c02810 0.83 -0.9
271,794 + -0.5
271,835 + +1.7
271,835 + +0.6
271,835 + +0.6
271,843 - -0.0
271,843 - +0.2
271,870 + -0.6
271,873 - -0.8
271,895 + -0.2
271,903 + +0.6
271,918 - -0.3
272,044 + PGA1_c02820 0.19 +0.3
272,052 - PGA1_c02820 0.20 -1.6
272,052 - PGA1_c02820 0.20 -0.7
272,133 - PGA1_c02820 0.33 -0.2
272,133 - PGA1_c02820 0.33 +0.3
272,150 + PGA1_c02820 0.35 -0.8
272,158 - PGA1_c02820 0.36 +0.3
272,158 - PGA1_c02820 0.36 +0.5
272,158 - PGA1_c02820 0.36 -1.2
272,158 - PGA1_c02820 0.36 -1.3
272,160 + PGA1_c02820 0.37 -2.3
272,160 + PGA1_c02820 0.37 +1.3
272,168 - PGA1_c02820 0.38 +0.7
272,168 - PGA1_c02820 0.38 -0.0
272,168 - PGA1_c02820 0.38 -0.6
272,195 - PGA1_c02820 0.42 +0.3
272,254 - PGA1_c02820 0.51 -0.7
272,290 + PGA1_c02820 0.56 -0.4
272,300 + PGA1_c02820 0.58 -0.3
272,310 - PGA1_c02820 0.60 +0.2
272,339 - PGA1_c02820 0.64 -1.9
272,404 + PGA1_c02820 0.74 -0.5
272,404 + PGA1_c02820 0.74 +0.7
272,412 - PGA1_c02820 0.75 +0.0
272,412 - PGA1_c02820 0.75 -1.8
272,412 - PGA1_c02820 0.75 +1.0
272,414 + PGA1_c02820 0.75 -0.2
272,414 + PGA1_c02820 0.75 +1.1
272,414 + PGA1_c02820 0.75 +0.8
272,422 - PGA1_c02820 0.77 -0.5
272,428 + PGA1_c02820 0.77 +1.0
272,443 - PGA1_c02820 0.80 -0.1
272,470 + PGA1_c02820 0.84 +0.2
272,470 + PGA1_c02820 0.84 +0.3
272,470 + PGA1_c02820 0.84 -2.1
272,470 + PGA1_c02820 0.84 -0.4
272,470 + PGA1_c02820 0.84 +0.8
272,470 + PGA1_c02820 0.84 +0.0
272,470 + PGA1_c02820 0.84 +0.2
272,470 + PGA1_c02820 0.84 +0.2
272,470 + PGA1_c02820 0.84 -1.6
272,470 + PGA1_c02820 0.84 +0.0
272,478 - PGA1_c02820 0.85 +0.0
272,478 - PGA1_c02820 0.85 -0.6
272,478 - PGA1_c02820 0.85 +1.7
272,478 - PGA1_c02820 0.85 -0.1
272,478 - PGA1_c02820 0.85 +0.8
272,478 - PGA1_c02820 0.85 +0.2
272,478 - PGA1_c02820 0.85 +0.1
272,478 - PGA1_c02820 0.85 -0.0
272,478 - PGA1_c02820 0.85 -0.4
272,478 - PGA1_c02820 0.85 -0.3
272,478 - PGA1_c02820 0.85 -1.2
272,478 - PGA1_c02820 0.85 +0.9
272,478 - PGA1_c02820 0.85 +0.9
272,478 - PGA1_c02820 0.85 -1.3
272,493 + PGA1_c02820 0.87 -0.1
272,537 + -0.4
272,664 - +0.1
272,674 + +0.8
272,674 + +0.1
272,674 + +0.3
272,682 - +0.1
272,682 - -0.1
272,716 + +1.2
272,716 + -0.0
272,716 + +1.0
272,722 + -0.4
272,724 - +0.4
272,724 - +0.8
272,727 + +1.0
272,727 + -0.0
272,732 + -1.6
272,735 - +1.1
272,742 + +0.3
272,745 - -0.3
272,788 - +0.0
272,820 + +0.3
272,820 + +1.4
272,828 - -1.5
272,830 + +1.6
272,830 + +0.3
272,838 - +0.8
272,838 - +0.2
272,850 + -0.5
272,858 - +0.5
272,858 - -0.7
272,858 - +0.3
272,858 - +1.3
272,858 - +1.0
272,858 - -1.3

Or see this region's nucleotide sequence