Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2263 and HP15_2264 are separated by 273 nucleotides HP15_2264 and HP15_2265 are separated by 13 nucleotides HP15_2265 and HP15_2266 are separated by 156 nucleotides
HP15_2263: HP15_2263 - conserved hypothetical protein, membrane, at 2,384,112 to 2,384,915
_2263
HP15_2264: HP15_2264 - riboflavin synthase subunit alpha, at 2,385,189 to 2,385,809
_2264
HP15_2265: HP15_2265 - rRNA (guanine-N2-)-methyltransferase, RsmD, at 2,385,823 to 2,386,980
_2265
HP15_2266: HP15_2266 - rRNA (guanine-N(2)-)-methyltransferase, at 2,387,137 to 2,388,183
_2266
Position (kb)
2385
2386
2387 Strain fitness (log2 ratio)
-1
0
1
2 at 2384.937 kb on - strand at 2384.954 kb on + strand at 2384.954 kb on + strand at 2384.955 kb on - strand at 2385.780 kb on + strand at 2385.788 kb on - strand at 2385.853 kb on + strand at 2385.954 kb on + strand, within HP15_2265 at 2386.471 kb on + strand, within HP15_2265 at 2386.473 kb on + strand, within HP15_2265 at 2386.503 kb on + strand, within HP15_2265 at 2386.575 kb on + strand, within HP15_2265 at 2386.781 kb on - strand, within HP15_2265 at 2386.793 kb on + strand, within HP15_2265 at 2386.801 kb on - strand, within HP15_2265 at 2387.105 kb on + strand at 2387.113 kb on - strand at 2387.336 kb on + strand, within HP15_2266 at 2387.366 kb on - strand, within HP15_2266 at 2387.402 kb on + strand, within HP15_2266 at 2387.402 kb on + strand, within HP15_2266 at 2387.410 kb on - strand, within HP15_2266 at 2387.435 kb on + strand, within HP15_2266 at 2387.438 kb on - strand, within HP15_2266 at 2387.450 kb on - strand, within HP15_2266 at 2387.496 kb on + strand, within HP15_2266 at 2387.589 kb on - strand, within HP15_2266 at 2387.706 kb on + strand, within HP15_2266 at 2387.767 kb on - strand, within HP15_2266 at 2387.813 kb on + strand, within HP15_2266 at 2387.813 kb on + strand, within HP15_2266 at 2387.813 kb on + strand, within HP15_2266 at 2387.821 kb on - strand, within HP15_2266 at 2387.886 kb on + strand, within HP15_2266 at 2387.935 kb on - strand, within HP15_2266 at 2387.979 kb on + strand, within HP15_2266
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,384,937 - -0.7 2,384,954 + -0.5 2,384,954 + +1.2 2,384,955 - -0.2 2,385,780 + -0.1 2,385,788 - -0.6 2,385,853 + -0.3 2,385,954 + HP15_2265 0.11 -0.2 2,386,471 + HP15_2265 0.56 -1.2 2,386,473 + HP15_2265 0.56 -0.7 2,386,503 + HP15_2265 0.59 -0.9 2,386,575 + HP15_2265 0.65 +1.9 2,386,781 - HP15_2265 0.83 -0.7 2,386,793 + HP15_2265 0.84 -0.6 2,386,801 - HP15_2265 0.84 -0.4 2,387,105 + -0.4 2,387,113 - -0.7 2,387,336 + HP15_2266 0.19 +0.3 2,387,366 - HP15_2266 0.22 -1.5 2,387,402 + HP15_2266 0.25 +1.5 2,387,402 + HP15_2266 0.25 +1.3 2,387,410 - HP15_2266 0.26 +0.7 2,387,435 + HP15_2266 0.28 +1.5 2,387,438 - HP15_2266 0.29 -0.8 2,387,450 - HP15_2266 0.30 +1.7 2,387,496 + HP15_2266 0.34 -0.6 2,387,589 - HP15_2266 0.43 +0.5 2,387,706 + HP15_2266 0.54 -0.5 2,387,767 - HP15_2266 0.60 -0.3 2,387,813 + HP15_2266 0.65 -0.5 2,387,813 + HP15_2266 0.65 +1.3 2,387,813 + HP15_2266 0.65 -1.5 2,387,821 - HP15_2266 0.65 -0.6 2,387,886 + HP15_2266 0.72 -0.8 2,387,935 - HP15_2266 0.76 -0.7 2,387,979 + HP15_2266 0.80 -0.9
Or see this region's nucleotide sequence