Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_204 and HP15_205 are separated by 75 nucleotides HP15_205 and HP15_206 overlap by 14 nucleotides HP15_206 and HP15_207 are separated by 76 nucleotides HP15_207 and HP15_208 are separated by 89 nucleotides HP15_208 and HP15_209 are separated by 9 nucleotides
HP15_204: HP15_204 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 191,528 to 192,538
_204
HP15_205: HP15_205 - protein containing bacterial regulatory protein, LysR domain, at 192,614 to 193,528
_205
HP15_206: HP15_206 - Xaa-Pro dipeptidase, at 193,515 to 194,837
_206
HP15_207: HP15_207 - BFD-like (2Fe-2S)-binding region, at 194,914 to 195,120
_207
HP15_208: HP15_208 - bacterioferritin, at 195,210 to 195,686
_208
HP15_209: HP15_209 - phosphomannomutase, at 195,696 to 197,054
_209
Position (kb) 193
194
195 Strain fitness (log2 ratio) -1
0
1
2 at 192.563 kb on - strand at 192.599 kb on + strand at 192.649 kb on + strand at 192.649 kb on + strand at 192.649 kb on + strand at 192.657 kb on - strand at 192.657 kb on - strand at 192.745 kb on - strand, within HP15_205 at 193.027 kb on - strand, within HP15_205 at 193.080 kb on - strand, within HP15_205 at 193.100 kb on + strand, within HP15_205 at 193.144 kb on - strand, within HP15_205 at 193.191 kb on + strand, within HP15_205 at 193.213 kb on - strand, within HP15_205 at 193.305 kb on + strand, within HP15_205 at 193.340 kb on + strand, within HP15_205 at 193.340 kb on + strand, within HP15_205 at 193.348 kb on - strand, within HP15_205 at 193.380 kb on - strand, within HP15_205 at 193.416 kb on - strand, within HP15_205 at 193.459 kb on - strand at 193.496 kb on - strand at 193.654 kb on - strand, within HP15_206 at 193.681 kb on + strand, within HP15_206 at 193.697 kb on + strand, within HP15_206 at 193.700 kb on - strand, within HP15_206 at 193.705 kb on - strand, within HP15_206 at 193.710 kb on - strand, within HP15_206 at 193.759 kb on - strand, within HP15_206 at 193.891 kb on + strand, within HP15_206 at 193.899 kb on - strand, within HP15_206 at 193.975 kb on + strand, within HP15_206 at 193.975 kb on + strand, within HP15_206 at 194.011 kb on + strand, within HP15_206 at 194.019 kb on - strand, within HP15_206 at 194.019 kb on - strand, within HP15_206 at 194.021 kb on + strand, within HP15_206 at 194.021 kb on + strand, within HP15_206 at 194.021 kb on + strand, within HP15_206 at 194.021 kb on + strand, within HP15_206 at 194.029 kb on - strand, within HP15_206 at 194.029 kb on - strand, within HP15_206 at 194.029 kb on - strand, within HP15_206 at 194.105 kb on - strand, within HP15_206 at 194.182 kb on - strand, within HP15_206 at 194.203 kb on - strand, within HP15_206 at 194.295 kb on + strand, within HP15_206 at 194.304 kb on - strand, within HP15_206 at 194.304 kb on - strand, within HP15_206 at 194.348 kb on + strand, within HP15_206 at 194.348 kb on + strand, within HP15_206 at 194.356 kb on - strand, within HP15_206 at 194.357 kb on - strand, within HP15_206 at 194.379 kb on - strand, within HP15_206 at 194.522 kb on + strand, within HP15_206 at 194.537 kb on + strand, within HP15_206 at 194.637 kb on - strand, within HP15_206 at 194.792 kb on + strand at 194.823 kb on - strand at 194.922 kb on - strand at 194.936 kb on + strand, within HP15_207 at 195.163 kb on + strand at 195.177 kb on - strand at 195.249 kb on + strand at 195.525 kb on + strand, within HP15_208 at 195.556 kb on + strand, within HP15_208 at 195.702 kb on - strand at 195.762 kb on - strand at 195.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 192,563 - +1.6 192,599 + -0.3 192,649 + -0.7 192,649 + -0.5 192,649 + +0.8 192,657 - +0.3 192,657 - -1.2 192,745 - HP15_205 0.14 +2.0 193,027 - HP15_205 0.45 -0.7 193,080 - HP15_205 0.51 -0.2 193,100 + HP15_205 0.53 -0.1 193,144 - HP15_205 0.58 +1.3 193,191 + HP15_205 0.63 -0.8 193,213 - HP15_205 0.65 +0.0 193,305 + HP15_205 0.76 -0.1 193,340 + HP15_205 0.79 -0.7 193,340 + HP15_205 0.79 -0.8 193,348 - HP15_205 0.80 -0.3 193,380 - HP15_205 0.84 +0.5 193,416 - HP15_205 0.88 +0.2 193,459 - -0.6 193,496 - +0.6 193,654 - HP15_206 0.11 +1.7 193,681 + HP15_206 0.13 +1.7 193,697 + HP15_206 0.14 +2.1 193,700 - HP15_206 0.14 -0.7 193,705 - HP15_206 0.14 +1.8 193,710 - HP15_206 0.15 -0.4 193,759 - HP15_206 0.18 -0.4 193,891 + HP15_206 0.28 +0.8 193,899 - HP15_206 0.29 -0.6 193,975 + HP15_206 0.35 +2.5 193,975 + HP15_206 0.35 +1.5 194,011 + HP15_206 0.37 +0.6 194,019 - HP15_206 0.38 -1.0 194,019 - HP15_206 0.38 +1.7 194,021 + HP15_206 0.38 -0.8 194,021 + HP15_206 0.38 -0.7 194,021 + HP15_206 0.38 -1.6 194,021 + HP15_206 0.38 +0.4 194,029 - HP15_206 0.39 +0.3 194,029 - HP15_206 0.39 -0.7 194,029 - HP15_206 0.39 +1.6 194,105 - HP15_206 0.45 -0.3 194,182 - HP15_206 0.50 -1.0 194,203 - HP15_206 0.52 +1.6 194,295 + HP15_206 0.59 -0.2 194,304 - HP15_206 0.60 +1.5 194,304 - HP15_206 0.60 -0.9 194,348 + HP15_206 0.63 -0.9 194,348 + HP15_206 0.63 +1.3 194,356 - HP15_206 0.64 -0.2 194,357 - HP15_206 0.64 +2.3 194,379 - HP15_206 0.65 +1.1 194,522 + HP15_206 0.76 -1.7 194,537 + HP15_206 0.77 +1.5 194,637 - HP15_206 0.85 +0.4 194,792 + -0.2 194,823 - +1.8 194,922 - +0.4 194,936 + HP15_207 0.11 +0.4 195,163 + -1.4 195,177 - +0.3 195,249 + -0.6 195,525 + HP15_208 0.66 -0.2 195,556 + HP15_208 0.73 -0.2 195,702 - -0.1 195,762 - -0.1 195,829 - -0.6
Or see this region's nucleotide sequence