Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01990 and PGA1_c02000 are separated by 3 nucleotides PGA1_c02000 and PGA1_c02010 are separated by 12 nucleotides PGA1_c02010 and PGA1_c02020 are separated by 148 nucleotides
PGA1_c01990: PGA1_c01990 - glutamate/glutamine/aspartate/asparagine transport system permease protein BztB, at 181,748 to 182,980
_c01990
PGA1_c02000: PGA1_c02000 - glutamate/glutamine/aspartate/asparagine transport system permease protein BztC, at 182,984 to 184,282
_c02000
PGA1_c02010: PGA1_c02010 - glutamate/glutamine/aspartate/asparagine transport ATP-binding protein BztD, at 184,295 to 185,086
_c02010
PGA1_c02020: PGA1_c02020 - Predicted metal-binding protein, at 185,235 to 185,693
_c02020
Position (kb) 182
183
184
185 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 182.021 kb on + strand, within PGA1_c01990 at 182.084 kb on - strand, within PGA1_c01990 at 182.095 kb on + strand, within PGA1_c01990 at 182.281 kb on - strand, within PGA1_c01990 at 182.339 kb on - strand, within PGA1_c01990 at 182.371 kb on + strand, within PGA1_c01990 at 182.371 kb on + strand, within PGA1_c01990 at 182.371 kb on + strand, within PGA1_c01990 at 182.379 kb on - strand, within PGA1_c01990 at 182.384 kb on - strand, within PGA1_c01990 at 182.407 kb on - strand, within PGA1_c01990 at 182.483 kb on - strand, within PGA1_c01990 at 182.515 kb on + strand, within PGA1_c01990 at 182.523 kb on - strand, within PGA1_c01990 at 182.523 kb on - strand, within PGA1_c01990 at 182.525 kb on - strand, within PGA1_c01990 at 182.556 kb on - strand, within PGA1_c01990 at 182.592 kb on + strand, within PGA1_c01990 at 182.608 kb on - strand, within PGA1_c01990 at 182.648 kb on + strand, within PGA1_c01990 at 182.666 kb on + strand, within PGA1_c01990 at 182.674 kb on - strand, within PGA1_c01990 at 182.674 kb on - strand, within PGA1_c01990 at 182.810 kb on + strand, within PGA1_c01990 at 182.818 kb on - strand, within PGA1_c01990 at 182.828 kb on - strand, within PGA1_c01990 at 182.853 kb on + strand, within PGA1_c01990 at 182.988 kb on + strand at 182.999 kb on - strand at 183.069 kb on - strand at 183.142 kb on + strand, within PGA1_c02000 at 183.142 kb on + strand, within PGA1_c02000 at 183.150 kb on - strand, within PGA1_c02000 at 183.150 kb on - strand, within PGA1_c02000 at 183.150 kb on - strand, within PGA1_c02000 at 183.152 kb on + strand, within PGA1_c02000 at 183.232 kb on - strand, within PGA1_c02000 at 183.380 kb on - strand, within PGA1_c02000 at 183.380 kb on - strand, within PGA1_c02000 at 183.392 kb on + strand, within PGA1_c02000 at 183.473 kb on - strand, within PGA1_c02000 at 183.483 kb on - strand, within PGA1_c02000 at 183.530 kb on + strand, within PGA1_c02000 at 183.533 kb on - strand, within PGA1_c02000 at 183.533 kb on - strand, within PGA1_c02000 at 183.538 kb on - strand, within PGA1_c02000 at 183.541 kb on + strand, within PGA1_c02000 at 183.622 kb on + strand, within PGA1_c02000 at 183.635 kb on - strand, within PGA1_c02000 at 183.647 kb on - strand, within PGA1_c02000 at 183.674 kb on - strand, within PGA1_c02000 at 183.685 kb on - strand, within PGA1_c02000 at 183.685 kb on - strand, within PGA1_c02000 at 183.721 kb on + strand, within PGA1_c02000 at 183.736 kb on + strand, within PGA1_c02000 at 183.744 kb on - strand, within PGA1_c02000 at 183.744 kb on - strand, within PGA1_c02000 at 183.751 kb on + strand, within PGA1_c02000 at 183.751 kb on + strand, within PGA1_c02000 at 183.871 kb on + strand, within PGA1_c02000 at 183.939 kb on + strand, within PGA1_c02000 at 183.960 kb on - strand, within PGA1_c02000 at 183.979 kb on - strand, within PGA1_c02000 at 183.981 kb on + strand, within PGA1_c02000 at 183.989 kb on - strand, within PGA1_c02000 at 184.030 kb on + strand, within PGA1_c02000 at 184.086 kb on - strand, within PGA1_c02000 at 184.152 kb on + strand, within PGA1_c02000 at 184.192 kb on - strand at 184.192 kb on - strand at 184.247 kb on - strand at 184.276 kb on + strand at 184.276 kb on + strand at 184.279 kb on - strand at 184.284 kb on - strand at 184.284 kb on - strand at 184.476 kb on + strand, within PGA1_c02010 at 184.530 kb on - strand, within PGA1_c02010 at 184.542 kb on + strand, within PGA1_c02010 at 184.542 kb on + strand, within PGA1_c02010 at 184.542 kb on + strand, within PGA1_c02010 at 184.542 kb on + strand, within PGA1_c02010 at 184.542 kb on + strand, within PGA1_c02010 at 184.550 kb on - strand, within PGA1_c02010 at 184.555 kb on - strand, within PGA1_c02010 at 184.584 kb on + strand, within PGA1_c02010 at 184.584 kb on + strand, within PGA1_c02010 at 184.592 kb on - strand, within PGA1_c02010 at 184.592 kb on - strand, within PGA1_c02010 at 184.611 kb on + strand, within PGA1_c02010 at 184.620 kb on - strand, within PGA1_c02010 at 184.621 kb on + strand, within PGA1_c02010 at 184.663 kb on + strand, within PGA1_c02010 at 184.694 kb on + strand, within PGA1_c02010 at 184.768 kb on + strand, within PGA1_c02010 at 184.773 kb on - strand, within PGA1_c02010 at 184.773 kb on - strand, within PGA1_c02010 at 184.775 kb on + strand, within PGA1_c02010 at 184.775 kb on + strand, within PGA1_c02010 at 184.778 kb on - strand, within PGA1_c02010 at 184.786 kb on + strand, within PGA1_c02010 at 184.856 kb on - strand, within PGA1_c02010 at 184.912 kb on + strand, within PGA1_c02010 at 184.919 kb on + strand, within PGA1_c02010 at 184.929 kb on + strand, within PGA1_c02010 at 185.082 kb on + strand at 185.090 kb on - strand at 185.215 kb on + strand at 185.253 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 182,021 + PGA1_c01990 0.22 -0.7 182,084 - PGA1_c01990 0.27 -1.0 182,095 + PGA1_c01990 0.28 -1.8 182,281 - PGA1_c01990 0.43 -2.0 182,339 - PGA1_c01990 0.48 -1.0 182,371 + PGA1_c01990 0.51 -0.6 182,371 + PGA1_c01990 0.51 -1.9 182,371 + PGA1_c01990 0.51 -1.7 182,379 - PGA1_c01990 0.51 -0.9 182,384 - PGA1_c01990 0.52 -0.8 182,407 - PGA1_c01990 0.53 -1.5 182,483 - PGA1_c01990 0.60 -2.1 182,515 + PGA1_c01990 0.62 -1.5 182,523 - PGA1_c01990 0.63 -1.2 182,523 - PGA1_c01990 0.63 -2.3 182,525 - PGA1_c01990 0.63 +0.3 182,556 - PGA1_c01990 0.66 -1.7 182,592 + PGA1_c01990 0.68 -2.4 182,608 - PGA1_c01990 0.70 -0.2 182,648 + PGA1_c01990 0.73 -0.4 182,666 + PGA1_c01990 0.74 -2.4 182,674 - PGA1_c01990 0.75 -0.9 182,674 - PGA1_c01990 0.75 +0.1 182,810 + PGA1_c01990 0.86 -2.5 182,818 - PGA1_c01990 0.87 -1.1 182,828 - PGA1_c01990 0.88 -1.1 182,853 + PGA1_c01990 0.90 -0.6 182,988 + -1.4 182,999 - -1.7 183,069 - -1.5 183,142 + PGA1_c02000 0.12 -0.5 183,142 + PGA1_c02000 0.12 -0.6 183,150 - PGA1_c02000 0.13 -3.3 183,150 - PGA1_c02000 0.13 -0.5 183,150 - PGA1_c02000 0.13 -0.7 183,152 + PGA1_c02000 0.13 -1.3 183,232 - PGA1_c02000 0.19 -1.0 183,380 - PGA1_c02000 0.30 -2.1 183,380 - PGA1_c02000 0.30 -1.8 183,392 + PGA1_c02000 0.31 +0.7 183,473 - PGA1_c02000 0.38 -3.0 183,483 - PGA1_c02000 0.38 -3.0 183,530 + PGA1_c02000 0.42 -2.0 183,533 - PGA1_c02000 0.42 -0.4 183,533 - PGA1_c02000 0.42 -1.0 183,538 - PGA1_c02000 0.43 -1.7 183,541 + PGA1_c02000 0.43 -0.5 183,622 + PGA1_c02000 0.49 -1.4 183,635 - PGA1_c02000 0.50 +0.2 183,647 - PGA1_c02000 0.51 -1.4 183,674 - PGA1_c02000 0.53 -1.3 183,685 - PGA1_c02000 0.54 -3.2 183,685 - PGA1_c02000 0.54 +0.4 183,721 + PGA1_c02000 0.57 -1.2 183,736 + PGA1_c02000 0.58 -1.6 183,744 - PGA1_c02000 0.59 -0.7 183,744 - PGA1_c02000 0.59 -3.7 183,751 + PGA1_c02000 0.59 -1.2 183,751 + PGA1_c02000 0.59 -1.5 183,871 + PGA1_c02000 0.68 -2.2 183,939 + PGA1_c02000 0.74 -1.2 183,960 - PGA1_c02000 0.75 -1.8 183,979 - PGA1_c02000 0.77 +0.1 183,981 + PGA1_c02000 0.77 +0.2 183,989 - PGA1_c02000 0.77 -1.1 184,030 + PGA1_c02000 0.81 -2.2 184,086 - PGA1_c02000 0.85 -1.5 184,152 + PGA1_c02000 0.90 -2.1 184,192 - -2.7 184,192 - -1.8 184,247 - -2.2 184,276 + -1.5 184,276 + -1.6 184,279 - -0.7 184,284 - -2.0 184,284 - -3.4 184,476 + PGA1_c02010 0.23 -3.9 184,530 - PGA1_c02010 0.30 +0.5 184,542 + PGA1_c02010 0.31 -0.1 184,542 + PGA1_c02010 0.31 -2.1 184,542 + PGA1_c02010 0.31 -1.6 184,542 + PGA1_c02010 0.31 -0.8 184,542 + PGA1_c02010 0.31 -1.9 184,550 - PGA1_c02010 0.32 -0.2 184,555 - PGA1_c02010 0.33 -0.8 184,584 + PGA1_c02010 0.36 -1.5 184,584 + PGA1_c02010 0.36 -0.9 184,592 - PGA1_c02010 0.38 -2.6 184,592 - PGA1_c02010 0.38 -1.5 184,611 + PGA1_c02010 0.40 -2.8 184,620 - PGA1_c02010 0.41 -0.9 184,621 + PGA1_c02010 0.41 -3.0 184,663 + PGA1_c02010 0.46 -0.9 184,694 + PGA1_c02010 0.50 -2.7 184,768 + PGA1_c02010 0.60 -2.1 184,773 - PGA1_c02010 0.60 -2.6 184,773 - PGA1_c02010 0.60 -1.9 184,775 + PGA1_c02010 0.61 -1.3 184,775 + PGA1_c02010 0.61 -0.5 184,778 - PGA1_c02010 0.61 -2.0 184,786 + PGA1_c02010 0.62 -0.5 184,856 - PGA1_c02010 0.71 -0.9 184,912 + PGA1_c02010 0.78 -1.7 184,919 + PGA1_c02010 0.79 -0.5 184,929 + PGA1_c02010 0.80 -0.5 185,082 + -0.7 185,090 - -2.7 185,215 + +0.1 185,253 + +0.2
Or see this region's nucleotide sequence