Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1915 and HP15_1916 overlap by 4 nucleotides HP15_1916 and HP15_1917 are separated by 0 nucleotides
HP15_1915: HP15_1915 - glycosyl transferase, group 1, at 2,029,817 to 2,030,968
_1915
HP15_1916: HP15_1916 - O-antigen polymerase, at 2,030,965 to 2,032,335
_1916
HP15_1917: HP15_1917 - glycosyl transferase, family 2, at 2,032,336 to 2,033,511
_1917
Position (kb)
2030
2031
2032
2033 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2030.029 kb on - strand, within HP15_1915 at 2030.228 kb on - strand, within HP15_1915 at 2030.271 kb on + strand, within HP15_1915 at 2030.285 kb on + strand, within HP15_1915 at 2030.300 kb on - strand, within HP15_1915 at 2030.530 kb on - strand, within HP15_1915 at 2030.531 kb on + strand, within HP15_1915 at 2030.562 kb on + strand, within HP15_1915 at 2030.587 kb on + strand, within HP15_1915 at 2030.612 kb on + strand, within HP15_1915 at 2030.698 kb on - strand at 2030.714 kb on + strand, within HP15_1915 at 2030.812 kb on - strand, within HP15_1915 at 2030.832 kb on - strand, within HP15_1915 at 2030.917 kb on - strand at 2031.237 kb on - strand, within HP15_1916 at 2031.324 kb on + strand, within HP15_1916 at 2031.327 kb on - strand, within HP15_1916 at 2031.418 kb on + strand, within HP15_1916 at 2031.438 kb on + strand, within HP15_1916 at 2031.600 kb on - strand, within HP15_1916 at 2031.607 kb on - strand, within HP15_1916 at 2031.607 kb on - strand, within HP15_1916 at 2031.698 kb on - strand, within HP15_1916 at 2031.698 kb on - strand, within HP15_1916 at 2031.798 kb on - strand, within HP15_1916 at 2031.798 kb on - strand, within HP15_1916 at 2031.848 kb on + strand, within HP15_1916 at 2031.913 kb on + strand, within HP15_1916 at 2031.913 kb on - strand, within HP15_1916 at 2032.163 kb on + strand, within HP15_1916 at 2032.356 kb on + strand at 2032.366 kb on + strand at 2032.366 kb on + strand at 2032.366 kb on + strand at 2032.397 kb on + strand at 2032.509 kb on + strand, within HP15_1917 at 2032.517 kb on - strand, within HP15_1917 at 2032.517 kb on - strand, within HP15_1917 at 2032.693 kb on - strand, within HP15_1917 at 2033.160 kb on - strand, within HP15_1917 at 2033.210 kb on - strand, within HP15_1917
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,030,029 - HP15_1915 0.18 -0.8 2,030,228 - HP15_1915 0.36 +1.5 2,030,271 + HP15_1915 0.39 +2.2 2,030,285 + HP15_1915 0.41 +0.2 2,030,300 - HP15_1915 0.42 -0.0 2,030,530 - HP15_1915 0.62 -0.3 2,030,531 + HP15_1915 0.62 +0.2 2,030,562 + HP15_1915 0.65 -0.1 2,030,587 + HP15_1915 0.67 -1.8 2,030,612 + HP15_1915 0.69 +0.7 2,030,698 - +1.0 2,030,714 + HP15_1915 0.78 +1.6 2,030,812 - HP15_1915 0.86 +1.3 2,030,832 - HP15_1915 0.88 -0.5 2,030,917 - -0.3 2,031,237 - HP15_1916 0.20 -0.8 2,031,324 + HP15_1916 0.26 +0.3 2,031,327 - HP15_1916 0.26 -0.1 2,031,418 + HP15_1916 0.33 -0.6 2,031,438 + HP15_1916 0.35 +1.4 2,031,600 - HP15_1916 0.46 -0.3 2,031,607 - HP15_1916 0.47 -0.7 2,031,607 - HP15_1916 0.47 +1.6 2,031,698 - HP15_1916 0.53 -0.5 2,031,698 - HP15_1916 0.53 -1.1 2,031,798 - HP15_1916 0.61 -0.2 2,031,798 - HP15_1916 0.61 -0.5 2,031,848 + HP15_1916 0.64 -0.1 2,031,913 + HP15_1916 0.69 +1.8 2,031,913 - HP15_1916 0.69 -1.3 2,032,163 + HP15_1916 0.87 -0.6 2,032,356 + -0.4 2,032,366 + +1.7 2,032,366 + -0.3 2,032,366 + -0.9 2,032,397 + -1.1 2,032,509 + HP15_1917 0.15 +0.7 2,032,517 - HP15_1917 0.15 +0.1 2,032,517 - HP15_1917 0.15 +0.9 2,032,693 - HP15_1917 0.30 -0.0 2,033,160 - HP15_1917 0.70 -0.1 2,033,210 - HP15_1917 0.74 -0.2
Or see this region's nucleotide sequence