Strain Fitness in Marinobacter adhaerens HP15 around HP15_1658

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1657 and HP15_1658 are separated by 30 nucleotidesHP15_1658 and HP15_1659 are separated by 342 nucleotidesHP15_1659 and HP15_1660 are separated by 16 nucleotidesHP15_1660 and HP15_1661 are separated by 195 nucleotides HP15_1657: HP15_1657 - dihydrolipoamide dehydrogenase, at 1,751,744 to 1,753,165 _1657 HP15_1658: HP15_1658 - glutaredoxin-like protein, at 1,753,196 to 1,753,408 _1658 HP15_1659: HP15_1659 - hypothetical protein, at 1,753,751 to 1,753,873 _1659 HP15_1660: HP15_1660 - hypothetical protein, at 1,753,890 to 1,754,024 _1660 HP15_1661: HP15_1661 - hydrolase-like protein, at 1,754,220 to 1,754,540 _1661 Position (kb) 1753 1754Strain fitness (log2 ratio) -2 -1 0 1 2at 1752.266 kb on + strand, within HP15_1657at 1752.274 kb on - strand, within HP15_1657at 1752.376 kb on + strand, within HP15_1657at 1752.430 kb on + strand, within HP15_1657at 1752.651 kb on - strand, within HP15_1657at 1752.807 kb on + strand, within HP15_1657at 1752.840 kb on - strand, within HP15_1657at 1752.897 kb on + strand, within HP15_1657at 1752.954 kb on - strand, within HP15_1657at 1753.042 kb on - strandat 1753.044 kb on - strandat 1753.059 kb on + strandat 1753.079 kb on + strandat 1753.152 kb on - strandat 1753.211 kb on - strandat 1753.353 kb on - strand, within HP15_1658at 1753.462 kb on + strandat 1753.536 kb on + strandat 1753.749 kb on + strandat 1753.858 kb on + strand, within HP15_1659at 1753.858 kb on + strand, within HP15_1659at 1753.984 kb on - strand, within HP15_1660at 1753.994 kb on - strand, within HP15_1660at 1754.289 kb on + strand, within HP15_1661

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,752,266 + HP15_1657 0.37 +0.1
1,752,274 - HP15_1657 0.37 +0.0
1,752,376 + HP15_1657 0.44 -0.1
1,752,430 + HP15_1657 0.48 -0.7
1,752,651 - HP15_1657 0.64 +1.5
1,752,807 + HP15_1657 0.75 +1.6
1,752,840 - HP15_1657 0.77 +1.8
1,752,897 + HP15_1657 0.81 -0.5
1,752,954 - HP15_1657 0.85 +0.2
1,753,042 - +0.2
1,753,044 - -1.0
1,753,059 + -1.9
1,753,079 + +1.5
1,753,152 - -0.9
1,753,211 - +1.7
1,753,353 - HP15_1658 0.74 +1.5
1,753,462 + -1.2
1,753,536 + +1.7
1,753,749 + +1.3
1,753,858 + HP15_1659 0.87 +1.5
1,753,858 + HP15_1659 0.87 +1.7
1,753,984 - HP15_1660 0.70 -0.6
1,753,994 - HP15_1660 0.77 +0.4
1,754,289 + HP15_1661 0.21 -1.5

Or see this region's nucleotide sequence