Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1572 and HP15_tRNA31 are separated by 224 nucleotides HP15_tRNA31 and HP15_tRNA32 are separated by 60 nucleotides HP15_tRNA32 and HP15_1573 are separated by 168 nucleotides
HP15_1572: HP15_1572 - ABC transporter, permease protein, at 1,652,431 to 1,653,597
_1572
HP15_tRNA31: HP15_tRNA31 - tRNA-Gly, at 1,653,822 to 1,653,897
_tRNA31
HP15_tRNA32: HP15_tRNA32 - tRNA-Cys, at 1,653,958 to 1,654,031
_tRNA32
HP15_1573: HP15_1573 - formate dehydrogenase, beta subunit, at 1,654,200 to 1,655,915
_1573
Position (kb)
1653
1654 Strain fitness (log2 ratio)
-1
0
1
2 at 1652.844 kb on + strand, within HP15_1572 at 1652.996 kb on - strand, within HP15_1572 at 1653.121 kb on + strand, within HP15_1572 at 1653.121 kb on + strand, within HP15_1572 at 1653.231 kb on + strand, within HP15_1572 at 1653.530 kb on - strand at 1653.582 kb on + strand at 1653.582 kb on + strand at 1653.590 kb on - strand at 1653.646 kb on - strand at 1654.562 kb on + strand, within HP15_1573 at 1654.562 kb on + strand, within HP15_1573 at 1654.582 kb on + strand, within HP15_1573 at 1654.593 kb on + strand, within HP15_1573 at 1654.593 kb on + strand, within HP15_1573 at 1654.601 kb on - strand, within HP15_1573 at 1654.601 kb on - strand, within HP15_1573 at 1654.601 kb on - strand, within HP15_1573 at 1654.730 kb on - strand, within HP15_1573
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 1,652,844 + HP15_1572 0.35 -0.1 1,652,996 - HP15_1572 0.48 -0.1 1,653,121 + HP15_1572 0.59 +1.5 1,653,121 + HP15_1572 0.59 +0.7 1,653,231 + HP15_1572 0.69 +0.2 1,653,530 - -0.8 1,653,582 + +1.6 1,653,582 + +0.1 1,653,590 - -0.8 1,653,646 - +0.0 1,654,562 + HP15_1573 0.21 -0.4 1,654,562 + HP15_1573 0.21 +0.5 1,654,582 + HP15_1573 0.22 +1.5 1,654,593 + HP15_1573 0.23 -0.4 1,654,593 + HP15_1573 0.23 +1.3 1,654,601 - HP15_1573 0.23 +0.2 1,654,601 - HP15_1573 0.23 +2.1 1,654,601 - HP15_1573 0.23 +1.5 1,654,730 - HP15_1573 0.31 -0.2
Or see this region's nucleotide sequence