Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1540 and HP15_1541 are separated by 4 nucleotides HP15_1541 and HP15_1542 are separated by 24 nucleotides HP15_1542 and HP15_1543 overlap by 4 nucleotides HP15_1543 and HP15_1544 are separated by 38 nucleotides
HP15_1540: HP15_1540 - protein YfcK, at 1,624,843 to 1,626,741
_1540
HP15_1541: HP15_1541 - peptidyl-prolyl cis-trans isomerase, cyclophilin type, at 1,626,746 to 1,627,357
_1541
HP15_1542: HP15_1542 - hypothetical protein, at 1,627,382 to 1,627,588
_1542
HP15_1543: HP15_1543 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,627,585 to 1,628,334
_1543
HP15_1544: HP15_1544 - flagella synthesis protein FlgN, at 1,628,373 to 1,628,843
_1544
Position (kb)
1627
1628 Strain fitness (log2 ratio)
-1
0
1
2 at 1626.384 kb on + strand, within HP15_1540 at 1626.417 kb on - strand, within HP15_1540 at 1626.533 kb on - strand, within HP15_1540 at 1626.646 kb on + strand at 1626.697 kb on - strand at 1626.707 kb on - strand at 1626.751 kb on - strand at 1626.858 kb on + strand, within HP15_1541 at 1626.900 kb on - strand, within HP15_1541 at 1627.230 kb on + strand, within HP15_1541 at 1627.247 kb on + strand, within HP15_1541 at 1627.483 kb on - strand, within HP15_1542 at 1627.499 kb on + strand, within HP15_1542 at 1627.665 kb on + strand, within HP15_1543 at 1627.684 kb on - strand, within HP15_1543 at 1627.685 kb on - strand, within HP15_1543 at 1627.740 kb on - strand, within HP15_1543 at 1627.779 kb on - strand, within HP15_1543 at 1627.808 kb on - strand, within HP15_1543 at 1628.139 kb on + strand, within HP15_1543 at 1628.242 kb on - strand, within HP15_1543 at 1628.328 kb on - strand at 1628.395 kb on - strand at 1628.428 kb on - strand, within HP15_1544 at 1628.562 kb on + strand, within HP15_1544
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 1,626,384 + HP15_1540 0.81 -0.5 1,626,417 - HP15_1540 0.83 -0.2 1,626,533 - HP15_1540 0.89 -0.3 1,626,646 + -0.7 1,626,697 - -0.4 1,626,707 - -0.7 1,626,751 - -0.1 1,626,858 + HP15_1541 0.18 -0.4 1,626,900 - HP15_1541 0.25 -0.0 1,627,230 + HP15_1541 0.79 +2.2 1,627,247 + HP15_1541 0.82 +1.5 1,627,483 - HP15_1542 0.49 -0.3 1,627,499 + HP15_1542 0.57 +2.0 1,627,665 + HP15_1543 0.11 +0.0 1,627,684 - HP15_1543 0.13 +2.2 1,627,685 - HP15_1543 0.13 +1.5 1,627,740 - HP15_1543 0.21 +0.1 1,627,779 - HP15_1543 0.26 +0.7 1,627,808 - HP15_1543 0.30 -0.5 1,628,139 + HP15_1543 0.74 +1.5 1,628,242 - HP15_1543 0.88 -0.9 1,628,328 - +0.8 1,628,395 - +1.6 1,628,428 - HP15_1544 0.12 +1.0 1,628,562 + HP15_1544 0.40 +1.1
Or see this region's nucleotide sequence