Strain Fitness in Marinobacter adhaerens HP15 around HP15_1542

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1540 and HP15_1541 are separated by 4 nucleotidesHP15_1541 and HP15_1542 are separated by 24 nucleotidesHP15_1542 and HP15_1543 overlap by 4 nucleotidesHP15_1543 and HP15_1544 are separated by 38 nucleotides HP15_1540: HP15_1540 - protein YfcK, at 1,624,843 to 1,626,741 _1540 HP15_1541: HP15_1541 - peptidyl-prolyl cis-trans isomerase, cyclophilin type, at 1,626,746 to 1,627,357 _1541 HP15_1542: HP15_1542 - hypothetical protein, at 1,627,382 to 1,627,588 _1542 HP15_1543: HP15_1543 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,627,585 to 1,628,334 _1543 HP15_1544: HP15_1544 - flagella synthesis protein FlgN, at 1,628,373 to 1,628,843 _1544 Position (kb) 1627 1628Strain fitness (log2 ratio) -1 0 1 2at 1626.384 kb on + strand, within HP15_1540at 1626.417 kb on - strand, within HP15_1540at 1626.533 kb on - strand, within HP15_1540at 1626.646 kb on + strandat 1626.697 kb on - strandat 1626.707 kb on - strandat 1626.751 kb on - strandat 1626.858 kb on + strand, within HP15_1541at 1626.900 kb on - strand, within HP15_1541at 1627.230 kb on + strand, within HP15_1541at 1627.247 kb on + strand, within HP15_1541at 1627.483 kb on - strand, within HP15_1542at 1627.499 kb on + strand, within HP15_1542at 1627.665 kb on + strand, within HP15_1543at 1627.684 kb on - strand, within HP15_1543at 1627.685 kb on - strand, within HP15_1543at 1627.740 kb on - strand, within HP15_1543at 1627.779 kb on - strand, within HP15_1543at 1627.808 kb on - strand, within HP15_1543at 1628.139 kb on + strand, within HP15_1543at 1628.242 kb on - strand, within HP15_1543at 1628.328 kb on - strandat 1628.395 kb on - strandat 1628.428 kb on - strand, within HP15_1544at 1628.562 kb on + strand, within HP15_1544

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,626,384 + HP15_1540 0.81 -0.5
1,626,417 - HP15_1540 0.83 -0.2
1,626,533 - HP15_1540 0.89 -0.3
1,626,646 + -0.7
1,626,697 - -0.4
1,626,707 - -0.7
1,626,751 - -0.1
1,626,858 + HP15_1541 0.18 -0.4
1,626,900 - HP15_1541 0.25 -0.0
1,627,230 + HP15_1541 0.79 +2.2
1,627,247 + HP15_1541 0.82 +1.5
1,627,483 - HP15_1542 0.49 -0.3
1,627,499 + HP15_1542 0.57 +2.0
1,627,665 + HP15_1543 0.11 +0.0
1,627,684 - HP15_1543 0.13 +2.2
1,627,685 - HP15_1543 0.13 +1.5
1,627,740 - HP15_1543 0.21 +0.1
1,627,779 - HP15_1543 0.26 +0.7
1,627,808 - HP15_1543 0.30 -0.5
1,628,139 + HP15_1543 0.74 +1.5
1,628,242 - HP15_1543 0.88 -0.9
1,628,328 - +0.8
1,628,395 - +1.6
1,628,428 - HP15_1544 0.12 +1.0
1,628,562 + HP15_1544 0.40 +1.1

Or see this region's nucleotide sequence