Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13250 and PGA1_c13260 are separated by 137 nucleotides PGA1_c13260 and PGA1_c13270 overlap by 4 nucleotides PGA1_c13270 and PGA1_c13280 are separated by 67 nucleotides
PGA1_c13250: PGA1_c13250 - Zn-dependent hydrolases, including glyoxylases, at 1,370,440 to 1,371,426
_c13250
PGA1_c13260: PGA1_c13260 - phosphoribosylformylglycinamidine cyclo-ligase PurM, at 1,371,564 to 1,372,610
_c13260
PGA1_c13270: PGA1_c13270 - phosphoribosylglycinamide formyltransferase PurN, at 1,372,607 to 1,373,203
_c13270
PGA1_c13280: PGA1_c13280 - hypothetical protein, at 1,373,271 to 1,373,456
_c13280
Position (kb)
1371
1372
1373 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1370.636 kb on + strand, within PGA1_c13250 at 1370.662 kb on - strand, within PGA1_c13250 at 1370.664 kb on + strand, within PGA1_c13250 at 1370.664 kb on + strand, within PGA1_c13250 at 1370.664 kb on + strand, within PGA1_c13250 at 1370.688 kb on - strand, within PGA1_c13250 at 1370.698 kb on - strand, within PGA1_c13250 at 1370.713 kb on + strand, within PGA1_c13250 at 1370.713 kb on + strand, within PGA1_c13250 at 1370.713 kb on + strand, within PGA1_c13250 at 1370.762 kb on - strand, within PGA1_c13250 at 1370.775 kb on - strand, within PGA1_c13250 at 1370.790 kb on - strand, within PGA1_c13250 at 1370.806 kb on + strand, within PGA1_c13250 at 1370.809 kb on - strand, within PGA1_c13250 at 1370.814 kb on - strand, within PGA1_c13250 at 1370.849 kb on + strand, within PGA1_c13250 at 1370.849 kb on + strand, within PGA1_c13250 at 1370.849 kb on + strand, within PGA1_c13250 at 1370.891 kb on - strand, within PGA1_c13250 at 1370.910 kb on + strand, within PGA1_c13250 at 1370.910 kb on + strand, within PGA1_c13250 at 1370.918 kb on - strand, within PGA1_c13250 at 1370.918 kb on - strand, within PGA1_c13250 at 1370.918 kb on - strand, within PGA1_c13250 at 1370.953 kb on + strand, within PGA1_c13250 at 1370.964 kb on + strand, within PGA1_c13250 at 1370.995 kb on + strand, within PGA1_c13250 at 1371.062 kb on + strand, within PGA1_c13250 at 1371.102 kb on + strand, within PGA1_c13250 at 1371.105 kb on - strand, within PGA1_c13250 at 1371.105 kb on - strand, within PGA1_c13250 at 1371.105 kb on - strand, within PGA1_c13250 at 1371.105 kb on - strand, within PGA1_c13250 at 1371.150 kb on - strand, within PGA1_c13250 at 1371.176 kb on + strand, within PGA1_c13250 at 1371.189 kb on + strand, within PGA1_c13250 at 1371.189 kb on + strand, within PGA1_c13250 at 1371.189 kb on + strand, within PGA1_c13250 at 1371.197 kb on - strand, within PGA1_c13250 at 1371.199 kb on + strand, within PGA1_c13250 at 1371.212 kb on + strand, within PGA1_c13250 at 1371.215 kb on - strand, within PGA1_c13250 at 1371.215 kb on - strand, within PGA1_c13250 at 1371.215 kb on - strand, within PGA1_c13250 at 1371.277 kb on + strand, within PGA1_c13250 at 1371.285 kb on - strand, within PGA1_c13250 at 1371.285 kb on - strand, within PGA1_c13250 at 1371.319 kb on + strand, within PGA1_c13250 at 1371.330 kb on - strand at 1371.463 kb on - strand at 1371.487 kb on - strand at 1371.533 kb on - strand at 1371.535 kb on - strand at 1371.564 kb on - strand at 1371.590 kb on - strand at 1371.628 kb on + strand at 1371.675 kb on + strand, within PGA1_c13260 at 1371.675 kb on + strand, within PGA1_c13260 at 1371.683 kb on - strand, within PGA1_c13260 at 1371.722 kb on - strand, within PGA1_c13260 at 1372.087 kb on - strand, within PGA1_c13260 at 1372.128 kb on + strand, within PGA1_c13260 at 1372.219 kb on + strand, within PGA1_c13260 at 1372.235 kb on + strand, within PGA1_c13260 at 1372.283 kb on + strand, within PGA1_c13260 at 1372.291 kb on - strand, within PGA1_c13260 at 1372.387 kb on + strand, within PGA1_c13260 at 1372.387 kb on + strand, within PGA1_c13260 at 1372.387 kb on + strand, within PGA1_c13260 at 1372.395 kb on - strand, within PGA1_c13260 at 1372.562 kb on - strand at 1372.591 kb on + strand at 1372.731 kb on + strand, within PGA1_c13270 at 1372.811 kb on + strand, within PGA1_c13270 at 1372.885 kb on + strand, within PGA1_c13270 at 1372.893 kb on - strand, within PGA1_c13270 at 1372.893 kb on - strand, within PGA1_c13270 at 1372.941 kb on + strand, within PGA1_c13270 at 1373.065 kb on - strand, within PGA1_c13270 at 1373.068 kb on + strand, within PGA1_c13270 at 1373.197 kb on + strand at 1373.197 kb on + strand at 1373.200 kb on - strand at 1373.269 kb on + strand at 1373.339 kb on + strand, within PGA1_c13280 at 1373.347 kb on - strand, within PGA1_c13280 at 1373.347 kb on - strand, within PGA1_c13280 at 1373.380 kb on - strand, within PGA1_c13280 at 1373.395 kb on - strand, within PGA1_c13280 at 1373.429 kb on + strand, within PGA1_c13280 at 1373.429 kb on + strand, within PGA1_c13280 at 1373.429 kb on + strand, within PGA1_c13280 at 1373.429 kb on + strand, within PGA1_c13280 at 1373.449 kb on - strand at 1373.449 kb on - strand at 1373.449 kb on - strand at 1373.449 kb on - strand at 1373.449 kb on - strand at 1373.487 kb on + strand at 1373.487 kb on + strand at 1373.487 kb on + strand at 1373.487 kb on + strand at 1373.487 kb on + strand at 1373.487 kb on + strand at 1373.495 kb on - strand at 1373.495 kb on - strand at 1373.495 kb on - strand at 1373.495 kb on - strand at 1373.563 kb on + strand at 1373.577 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 1,370,636 + PGA1_c13250 0.20 +0.8 1,370,662 - PGA1_c13250 0.22 -1.4 1,370,664 + PGA1_c13250 0.23 -3.0 1,370,664 + PGA1_c13250 0.23 -0.1 1,370,664 + PGA1_c13250 0.23 +0.1 1,370,688 - PGA1_c13250 0.25 +1.3 1,370,698 - PGA1_c13250 0.26 +0.9 1,370,713 + PGA1_c13250 0.28 +0.5 1,370,713 + PGA1_c13250 0.28 -1.2 1,370,713 + PGA1_c13250 0.28 +0.7 1,370,762 - PGA1_c13250 0.33 +0.1 1,370,775 - PGA1_c13250 0.34 -0.6 1,370,790 - PGA1_c13250 0.35 +0.7 1,370,806 + PGA1_c13250 0.37 -0.4 1,370,809 - PGA1_c13250 0.37 -0.2 1,370,814 - PGA1_c13250 0.38 +0.3 1,370,849 + PGA1_c13250 0.41 -0.7 1,370,849 + PGA1_c13250 0.41 -1.0 1,370,849 + PGA1_c13250 0.41 +0.9 1,370,891 - PGA1_c13250 0.46 -0.7 1,370,910 + PGA1_c13250 0.48 -0.8 1,370,910 + PGA1_c13250 0.48 -0.2 1,370,918 - PGA1_c13250 0.48 -0.3 1,370,918 - PGA1_c13250 0.48 +1.1 1,370,918 - PGA1_c13250 0.48 +0.7 1,370,953 + PGA1_c13250 0.52 +0.6 1,370,964 + PGA1_c13250 0.53 -1.3 1,370,995 + PGA1_c13250 0.56 -0.2 1,371,062 + PGA1_c13250 0.63 -0.2 1,371,102 + PGA1_c13250 0.67 +0.2 1,371,105 - PGA1_c13250 0.67 +0.9 1,371,105 - PGA1_c13250 0.67 +0.5 1,371,105 - PGA1_c13250 0.67 -1.7 1,371,105 - PGA1_c13250 0.67 -0.2 1,371,150 - PGA1_c13250 0.72 +1.6 1,371,176 + PGA1_c13250 0.75 -0.2 1,371,189 + PGA1_c13250 0.76 -0.5 1,371,189 + PGA1_c13250 0.76 +0.5 1,371,189 + PGA1_c13250 0.76 -0.5 1,371,197 - PGA1_c13250 0.77 +0.6 1,371,199 + PGA1_c13250 0.77 +0.6 1,371,212 + PGA1_c13250 0.78 -0.4 1,371,215 - PGA1_c13250 0.79 +0.3 1,371,215 - PGA1_c13250 0.79 +3.1 1,371,215 - PGA1_c13250 0.79 -0.2 1,371,277 + PGA1_c13250 0.85 +0.0 1,371,285 - PGA1_c13250 0.86 +1.9 1,371,285 - PGA1_c13250 0.86 +0.5 1,371,319 + PGA1_c13250 0.89 -1.7 1,371,330 - -0.0 1,371,463 - -0.9 1,371,487 - -0.7 1,371,533 - -1.9 1,371,535 - -0.3 1,371,564 - -2.6 1,371,590 - -2.2 1,371,628 + -3.1 1,371,675 + PGA1_c13260 0.11 -3.6 1,371,675 + PGA1_c13260 0.11 -3.4 1,371,683 - PGA1_c13260 0.11 -3.2 1,371,722 - PGA1_c13260 0.15 -2.8 1,372,087 - PGA1_c13260 0.50 -3.0 1,372,128 + PGA1_c13260 0.54 -1.7 1,372,219 + PGA1_c13260 0.63 -2.9 1,372,235 + PGA1_c13260 0.64 -2.6 1,372,283 + PGA1_c13260 0.69 -1.7 1,372,291 - PGA1_c13260 0.69 -2.9 1,372,387 + PGA1_c13260 0.79 -2.6 1,372,387 + PGA1_c13260 0.79 -0.5 1,372,387 + PGA1_c13260 0.79 -1.5 1,372,395 - PGA1_c13260 0.79 -2.8 1,372,562 - -1.6 1,372,591 + -3.6 1,372,731 + PGA1_c13270 0.21 -2.8 1,372,811 + PGA1_c13270 0.34 -2.2 1,372,885 + PGA1_c13270 0.47 -1.0 1,372,893 - PGA1_c13270 0.48 -2.0 1,372,893 - PGA1_c13270 0.48 -4.2 1,372,941 + PGA1_c13270 0.56 -1.9 1,373,065 - PGA1_c13270 0.77 -4.3 1,373,068 + PGA1_c13270 0.77 -1.8 1,373,197 + +0.7 1,373,197 + -1.5 1,373,200 - -4.3 1,373,269 + +0.7 1,373,339 + PGA1_c13280 0.37 -0.5 1,373,347 - PGA1_c13280 0.41 -2.9 1,373,347 - PGA1_c13280 0.41 -0.5 1,373,380 - PGA1_c13280 0.59 -1.1 1,373,395 - PGA1_c13280 0.67 -0.8 1,373,429 + PGA1_c13280 0.85 -0.3 1,373,429 + PGA1_c13280 0.85 -0.8 1,373,429 + PGA1_c13280 0.85 -0.2 1,373,429 + PGA1_c13280 0.85 +0.5 1,373,449 - +1.0 1,373,449 - -0.2 1,373,449 - +0.5 1,373,449 - -1.2 1,373,449 - -0.1 1,373,487 + -0.9 1,373,487 + -0.6 1,373,487 + -1.9 1,373,487 + +0.2 1,373,487 + -0.2 1,373,487 + +0.7 1,373,495 - -0.2 1,373,495 - -0.2 1,373,495 - +0.8 1,373,495 - +0.1 1,373,563 + -1.0 1,373,577 + +0.5
Or see this region's nucleotide sequence