Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13260

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c13250 and PGA1_c13260 are separated by 137 nucleotidesPGA1_c13260 and PGA1_c13270 overlap by 4 nucleotidesPGA1_c13270 and PGA1_c13280 are separated by 67 nucleotides PGA1_c13250: PGA1_c13250 - Zn-dependent hydrolases, including glyoxylases, at 1,370,440 to 1,371,426 _c13250 PGA1_c13260: PGA1_c13260 - phosphoribosylformylglycinamidine cyclo-ligase PurM, at 1,371,564 to 1,372,610 _c13260 PGA1_c13270: PGA1_c13270 - phosphoribosylglycinamide formyltransferase PurN, at 1,372,607 to 1,373,203 _c13270 PGA1_c13280: PGA1_c13280 - hypothetical protein, at 1,373,271 to 1,373,456 _c13280 Position (kb) 1371 1372 1373Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1370.636 kb on + strand, within PGA1_c13250at 1370.662 kb on - strand, within PGA1_c13250at 1370.664 kb on + strand, within PGA1_c13250at 1370.664 kb on + strand, within PGA1_c13250at 1370.664 kb on + strand, within PGA1_c13250at 1370.688 kb on - strand, within PGA1_c13250at 1370.698 kb on - strand, within PGA1_c13250at 1370.713 kb on + strand, within PGA1_c13250at 1370.713 kb on + strand, within PGA1_c13250at 1370.713 kb on + strand, within PGA1_c13250at 1370.762 kb on - strand, within PGA1_c13250at 1370.775 kb on - strand, within PGA1_c13250at 1370.790 kb on - strand, within PGA1_c13250at 1370.806 kb on + strand, within PGA1_c13250at 1370.809 kb on - strand, within PGA1_c13250at 1370.814 kb on - strand, within PGA1_c13250at 1370.849 kb on + strand, within PGA1_c13250at 1370.849 kb on + strand, within PGA1_c13250at 1370.849 kb on + strand, within PGA1_c13250at 1370.891 kb on - strand, within PGA1_c13250at 1370.910 kb on + strand, within PGA1_c13250at 1370.910 kb on + strand, within PGA1_c13250at 1370.918 kb on - strand, within PGA1_c13250at 1370.918 kb on - strand, within PGA1_c13250at 1370.918 kb on - strand, within PGA1_c13250at 1370.953 kb on + strand, within PGA1_c13250at 1370.964 kb on + strand, within PGA1_c13250at 1370.995 kb on + strand, within PGA1_c13250at 1371.062 kb on + strand, within PGA1_c13250at 1371.102 kb on + strand, within PGA1_c13250at 1371.105 kb on - strand, within PGA1_c13250at 1371.105 kb on - strand, within PGA1_c13250at 1371.105 kb on - strand, within PGA1_c13250at 1371.105 kb on - strand, within PGA1_c13250at 1371.150 kb on - strand, within PGA1_c13250at 1371.176 kb on + strand, within PGA1_c13250at 1371.189 kb on + strand, within PGA1_c13250at 1371.189 kb on + strand, within PGA1_c13250at 1371.189 kb on + strand, within PGA1_c13250at 1371.197 kb on - strand, within PGA1_c13250at 1371.199 kb on + strand, within PGA1_c13250at 1371.212 kb on + strand, within PGA1_c13250at 1371.215 kb on - strand, within PGA1_c13250at 1371.215 kb on - strand, within PGA1_c13250at 1371.215 kb on - strand, within PGA1_c13250at 1371.277 kb on + strand, within PGA1_c13250at 1371.285 kb on - strand, within PGA1_c13250at 1371.285 kb on - strand, within PGA1_c13250at 1371.319 kb on + strand, within PGA1_c13250at 1371.330 kb on - strandat 1371.463 kb on - strandat 1371.487 kb on - strandat 1371.533 kb on - strandat 1371.535 kb on - strandat 1371.564 kb on - strandat 1371.590 kb on - strandat 1371.628 kb on + strandat 1371.675 kb on + strand, within PGA1_c13260at 1371.675 kb on + strand, within PGA1_c13260at 1371.683 kb on - strand, within PGA1_c13260at 1371.722 kb on - strand, within PGA1_c13260at 1372.087 kb on - strand, within PGA1_c13260at 1372.128 kb on + strand, within PGA1_c13260at 1372.219 kb on + strand, within PGA1_c13260at 1372.235 kb on + strand, within PGA1_c13260at 1372.283 kb on + strand, within PGA1_c13260at 1372.291 kb on - strand, within PGA1_c13260at 1372.387 kb on + strand, within PGA1_c13260at 1372.387 kb on + strand, within PGA1_c13260at 1372.387 kb on + strand, within PGA1_c13260at 1372.395 kb on - strand, within PGA1_c13260at 1372.562 kb on - strandat 1372.591 kb on + strandat 1372.731 kb on + strand, within PGA1_c13270at 1372.811 kb on + strand, within PGA1_c13270at 1372.885 kb on + strand, within PGA1_c13270at 1372.893 kb on - strand, within PGA1_c13270at 1372.893 kb on - strand, within PGA1_c13270at 1372.941 kb on + strand, within PGA1_c13270at 1373.065 kb on - strand, within PGA1_c13270at 1373.068 kb on + strand, within PGA1_c13270at 1373.197 kb on + strandat 1373.197 kb on + strandat 1373.200 kb on - strandat 1373.269 kb on + strandat 1373.339 kb on + strand, within PGA1_c13280at 1373.347 kb on - strand, within PGA1_c13280at 1373.347 kb on - strand, within PGA1_c13280at 1373.380 kb on - strand, within PGA1_c13280at 1373.395 kb on - strand, within PGA1_c13280at 1373.429 kb on + strand, within PGA1_c13280at 1373.429 kb on + strand, within PGA1_c13280at 1373.429 kb on + strand, within PGA1_c13280at 1373.429 kb on + strand, within PGA1_c13280at 1373.449 kb on - strandat 1373.449 kb on - strandat 1373.449 kb on - strandat 1373.449 kb on - strandat 1373.449 kb on - strandat 1373.487 kb on + strandat 1373.487 kb on + strandat 1373.487 kb on + strandat 1373.487 kb on + strandat 1373.487 kb on + strandat 1373.487 kb on + strandat 1373.495 kb on - strandat 1373.495 kb on - strandat 1373.495 kb on - strandat 1373.495 kb on - strandat 1373.563 kb on + strandat 1373.577 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,370,636 + PGA1_c13250 0.20 +0.8
1,370,662 - PGA1_c13250 0.22 -1.4
1,370,664 + PGA1_c13250 0.23 -3.0
1,370,664 + PGA1_c13250 0.23 -0.1
1,370,664 + PGA1_c13250 0.23 +0.1
1,370,688 - PGA1_c13250 0.25 +1.3
1,370,698 - PGA1_c13250 0.26 +0.9
1,370,713 + PGA1_c13250 0.28 +0.5
1,370,713 + PGA1_c13250 0.28 -1.2
1,370,713 + PGA1_c13250 0.28 +0.7
1,370,762 - PGA1_c13250 0.33 +0.1
1,370,775 - PGA1_c13250 0.34 -0.6
1,370,790 - PGA1_c13250 0.35 +0.7
1,370,806 + PGA1_c13250 0.37 -0.4
1,370,809 - PGA1_c13250 0.37 -0.2
1,370,814 - PGA1_c13250 0.38 +0.3
1,370,849 + PGA1_c13250 0.41 -0.7
1,370,849 + PGA1_c13250 0.41 -1.0
1,370,849 + PGA1_c13250 0.41 +0.9
1,370,891 - PGA1_c13250 0.46 -0.7
1,370,910 + PGA1_c13250 0.48 -0.8
1,370,910 + PGA1_c13250 0.48 -0.2
1,370,918 - PGA1_c13250 0.48 -0.3
1,370,918 - PGA1_c13250 0.48 +1.1
1,370,918 - PGA1_c13250 0.48 +0.7
1,370,953 + PGA1_c13250 0.52 +0.6
1,370,964 + PGA1_c13250 0.53 -1.3
1,370,995 + PGA1_c13250 0.56 -0.2
1,371,062 + PGA1_c13250 0.63 -0.2
1,371,102 + PGA1_c13250 0.67 +0.2
1,371,105 - PGA1_c13250 0.67 +0.9
1,371,105 - PGA1_c13250 0.67 +0.5
1,371,105 - PGA1_c13250 0.67 -1.7
1,371,105 - PGA1_c13250 0.67 -0.2
1,371,150 - PGA1_c13250 0.72 +1.6
1,371,176 + PGA1_c13250 0.75 -0.2
1,371,189 + PGA1_c13250 0.76 -0.5
1,371,189 + PGA1_c13250 0.76 +0.5
1,371,189 + PGA1_c13250 0.76 -0.5
1,371,197 - PGA1_c13250 0.77 +0.6
1,371,199 + PGA1_c13250 0.77 +0.6
1,371,212 + PGA1_c13250 0.78 -0.4
1,371,215 - PGA1_c13250 0.79 +0.3
1,371,215 - PGA1_c13250 0.79 +3.1
1,371,215 - PGA1_c13250 0.79 -0.2
1,371,277 + PGA1_c13250 0.85 +0.0
1,371,285 - PGA1_c13250 0.86 +1.9
1,371,285 - PGA1_c13250 0.86 +0.5
1,371,319 + PGA1_c13250 0.89 -1.7
1,371,330 - -0.0
1,371,463 - -0.9
1,371,487 - -0.7
1,371,533 - -1.9
1,371,535 - -0.3
1,371,564 - -2.6
1,371,590 - -2.2
1,371,628 + -3.1
1,371,675 + PGA1_c13260 0.11 -3.6
1,371,675 + PGA1_c13260 0.11 -3.4
1,371,683 - PGA1_c13260 0.11 -3.2
1,371,722 - PGA1_c13260 0.15 -2.8
1,372,087 - PGA1_c13260 0.50 -3.0
1,372,128 + PGA1_c13260 0.54 -1.7
1,372,219 + PGA1_c13260 0.63 -2.9
1,372,235 + PGA1_c13260 0.64 -2.6
1,372,283 + PGA1_c13260 0.69 -1.7
1,372,291 - PGA1_c13260 0.69 -2.9
1,372,387 + PGA1_c13260 0.79 -2.6
1,372,387 + PGA1_c13260 0.79 -0.5
1,372,387 + PGA1_c13260 0.79 -1.5
1,372,395 - PGA1_c13260 0.79 -2.8
1,372,562 - -1.6
1,372,591 + -3.6
1,372,731 + PGA1_c13270 0.21 -2.8
1,372,811 + PGA1_c13270 0.34 -2.2
1,372,885 + PGA1_c13270 0.47 -1.0
1,372,893 - PGA1_c13270 0.48 -2.0
1,372,893 - PGA1_c13270 0.48 -4.2
1,372,941 + PGA1_c13270 0.56 -1.9
1,373,065 - PGA1_c13270 0.77 -4.3
1,373,068 + PGA1_c13270 0.77 -1.8
1,373,197 + +0.7
1,373,197 + -1.5
1,373,200 - -4.3
1,373,269 + +0.7
1,373,339 + PGA1_c13280 0.37 -0.5
1,373,347 - PGA1_c13280 0.41 -2.9
1,373,347 - PGA1_c13280 0.41 -0.5
1,373,380 - PGA1_c13280 0.59 -1.1
1,373,395 - PGA1_c13280 0.67 -0.8
1,373,429 + PGA1_c13280 0.85 -0.3
1,373,429 + PGA1_c13280 0.85 -0.8
1,373,429 + PGA1_c13280 0.85 -0.2
1,373,429 + PGA1_c13280 0.85 +0.5
1,373,449 - +1.0
1,373,449 - -0.2
1,373,449 - +0.5
1,373,449 - -1.2
1,373,449 - -0.1
1,373,487 + -0.9
1,373,487 + -0.6
1,373,487 + -1.9
1,373,487 + +0.2
1,373,487 + -0.2
1,373,487 + +0.7
1,373,495 - -0.2
1,373,495 - -0.2
1,373,495 - +0.8
1,373,495 - +0.1
1,373,563 + -1.0
1,373,577 + +0.5

Or see this region's nucleotide sequence