Strain Fitness in Marinobacter adhaerens HP15 around HP15_1263

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1261 and HP15_1262 overlap by 4 nucleotidesHP15_1262 and HP15_1263 are separated by 36 nucleotidesHP15_1263 and HP15_1264 are separated by 7 nucleotides HP15_1261: HP15_1261 - acireductone dioxygenase, ARD, at 1,321,053 to 1,321,613 _1261 HP15_1262: HP15_1262 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase, at 1,321,610 to 1,322,302 _1262 HP15_1263: HP15_1263 - conserved hypothetical protein, at 1,322,339 to 1,323,394 _1263 HP15_1264: HP15_1264 - type IV-A pilus assembly ATPase PilB, at 1,323,402 to 1,325,192 _1264 Position (kb) 1322 1323 1324Strain fitness (log2 ratio) -1 0 1 2 3at 1321.474 kb on + strand, within HP15_1261at 1321.474 kb on + strand, within HP15_1261at 1321.595 kb on + strandat 1322.160 kb on - strand, within HP15_1262at 1322.277 kb on + strandat 1322.523 kb on + strand, within HP15_1263at 1322.543 kb on + strand, within HP15_1263at 1322.755 kb on + strand, within HP15_1263at 1322.835 kb on - strand, within HP15_1263at 1322.836 kb on + strand, within HP15_1263at 1322.844 kb on - strand, within HP15_1263at 1323.027 kb on + strand, within HP15_1263at 1323.167 kb on + strand, within HP15_1263at 1323.492 kb on + strandat 1323.573 kb on - strandat 1323.681 kb on - strand, within HP15_1264at 1323.681 kb on - strand, within HP15_1264at 1323.683 kb on + strand, within HP15_1264at 1323.745 kb on + strand, within HP15_1264at 1324.060 kb on + strand, within HP15_1264at 1324.090 kb on - strand, within HP15_1264at 1324.107 kb on - strand, within HP15_1264at 1324.119 kb on - strand, within HP15_1264at 1324.119 kb on - strand, within HP15_1264

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,321,474 + HP15_1261 0.75 -0.6
1,321,474 + HP15_1261 0.75 +0.8
1,321,595 + +1.2
1,322,160 - HP15_1262 0.79 +0.6
1,322,277 + +0.9
1,322,523 + HP15_1263 0.17 +1.9
1,322,543 + HP15_1263 0.19 +1.3
1,322,755 + HP15_1263 0.39 +1.6
1,322,835 - HP15_1263 0.47 +1.6
1,322,836 + HP15_1263 0.47 -0.7
1,322,844 - HP15_1263 0.48 +1.7
1,323,027 + HP15_1263 0.65 +1.0
1,323,167 + HP15_1263 0.78 +1.8
1,323,492 + +0.2
1,323,573 - -0.2
1,323,681 - HP15_1264 0.16 +3.1
1,323,681 - HP15_1264 0.16 -0.3
1,323,683 + HP15_1264 0.16 -0.8
1,323,745 + HP15_1264 0.19 -0.3
1,324,060 + HP15_1264 0.37 -0.5
1,324,090 - HP15_1264 0.38 +1.2
1,324,107 - HP15_1264 0.39 -0.8
1,324,119 - HP15_1264 0.40 -1.2
1,324,119 - HP15_1264 0.40 -0.4

Or see this region's nucleotide sequence