Strain Fitness in Marinobacter adhaerens HP15 around HP15_rRNA7

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1245 and HP15_1246 are separated by 165 nucleotidesHP15_1246 and HP15_rRNA7 are separated by 208 nucleotidesHP15_rRNA7 and HP15_tRNA20 are separated by 92 nucleotidesHP15_tRNA20 and HP15_tRNA21 are separated by 122 nucleotidesHP15_tRNA21 and HP15_rRNA8 are separated by 340 nucleotides HP15_1245: HP15_1245 - phosphoribosylglycinamide formyltransferase 2, at 1,297,110 to 1,298,300 _1245 HP15_1246: HP15_1246 - hypothetical protein, at 1,298,466 to 1,298,612 _1246 HP15_rRNA7: HP15_rRNA7 - 16S ribosomal RNA, at 1,298,821 to 1,300,352 _rRNA7 HP15_tRNA20: HP15_tRNA20 - tRNA-Ile, at 1,300,445 to 1,300,521 _tRNA20 HP15_tRNA21: HP15_tRNA21 - tRNA-Ala, at 1,300,644 to 1,300,719 _tRNA21 HP15_rRNA8: HP15_rRNA8 - 23S ribosomal RNA, at 1,301,060 to 1,303,951 _rRNA8 Position (kb) 1298 1299 1300 1301Strain fitness (log2 ratio) -1 0 1 2at 1297.920 kb on - strand, within HP15_1245at 1297.975 kb on + strand, within HP15_1245at 1297.983 kb on - strand, within HP15_1245at 1297.983 kb on - strand, within HP15_1245at 1297.993 kb on - strand, within HP15_1245at 1298.007 kb on - strand, within HP15_1245at 1298.051 kb on - strand, within HP15_1245at 1298.148 kb on - strand, within HP15_1245at 1298.287 kb on + strandat 1298.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,297,920 - HP15_1245 0.68 -0.1
1,297,975 + HP15_1245 0.73 +1.4
1,297,983 - HP15_1245 0.73 +1.6
1,297,983 - HP15_1245 0.73 +0.7
1,297,993 - HP15_1245 0.74 +0.1
1,298,007 - HP15_1245 0.75 -0.4
1,298,051 - HP15_1245 0.79 +2.3
1,298,148 - HP15_1245 0.87 +0.5
1,298,287 + -0.9
1,298,305 + +0.0

Or see this region's nucleotide sequence