Strain Fitness in Marinobacter adhaerens HP15 around HP15_1246

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1245 and HP15_1246 are separated by 165 nucleotidesHP15_1246 and HP15_rRNA7 are separated by 208 nucleotides HP15_1245: HP15_1245 - phosphoribosylglycinamide formyltransferase 2, at 1,297,110 to 1,298,300 _1245 HP15_1246: HP15_1246 - hypothetical protein, at 1,298,466 to 1,298,612 _1246 HP15_rRNA7: HP15_rRNA7 - 16S ribosomal RNA, at 1,298,821 to 1,300,352 _rRNA7 Position (kb) 1298 1299Strain fitness (log2 ratio) -1 0 1 2at 1297.509 kb on + strand, within HP15_1245at 1297.566 kb on - strand, within HP15_1245at 1297.608 kb on + strand, within HP15_1245at 1297.615 kb on + strand, within HP15_1245at 1297.678 kb on + strand, within HP15_1245at 1297.685 kb on + strand, within HP15_1245at 1297.734 kb on - strand, within HP15_1245at 1297.744 kb on - strand, within HP15_1245at 1297.751 kb on + strand, within HP15_1245at 1297.920 kb on - strand, within HP15_1245at 1297.975 kb on + strand, within HP15_1245at 1297.983 kb on - strand, within HP15_1245at 1297.983 kb on - strand, within HP15_1245at 1297.993 kb on - strand, within HP15_1245at 1298.007 kb on - strand, within HP15_1245at 1298.051 kb on - strand, within HP15_1245at 1298.148 kb on - strand, within HP15_1245at 1298.287 kb on + strandat 1298.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,297,509 + HP15_1245 0.34 -1.0
1,297,566 - HP15_1245 0.38 -0.6
1,297,608 + HP15_1245 0.42 +1.6
1,297,615 + HP15_1245 0.42 -0.7
1,297,678 + HP15_1245 0.48 +1.3
1,297,685 + HP15_1245 0.48 +0.9
1,297,734 - HP15_1245 0.52 +0.6
1,297,744 - HP15_1245 0.53 -0.8
1,297,751 + HP15_1245 0.54 -0.1
1,297,920 - HP15_1245 0.68 -0.1
1,297,975 + HP15_1245 0.73 +1.4
1,297,983 - HP15_1245 0.73 +1.6
1,297,983 - HP15_1245 0.73 +0.7
1,297,993 - HP15_1245 0.74 +0.1
1,298,007 - HP15_1245 0.75 -0.4
1,298,051 - HP15_1245 0.79 +2.3
1,298,148 - HP15_1245 0.87 +0.5
1,298,287 + -0.9
1,298,305 + +0.0

Or see this region's nucleotide sequence