Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12590

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c12560 and PGA1_c12570 are separated by 93 nucleotidesPGA1_c12570 and PGA1_c12580 overlap by 1 nucleotidesPGA1_c12580 and PGA1_c12590 overlap by 37 nucleotidesPGA1_c12590 and PGA1_c12600 are separated by 118 nucleotides PGA1_c12560: PGA1_c12560 - putative NADH ubiquinone oxidoreductase subunit NDUFA12, at 1,303,552 to 1,303,938 _c12560 PGA1_c12570: PGA1_c12570 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 1,304,032 to 1,304,484 _c12570 PGA1_c12580: PGA1_c12580 - Uncharacterized protein conserved in bacteria (DUF2155)., at 1,304,484 to 1,304,846 _c12580 PGA1_c12590: PGA1_c12590 - leucyl/phenylalanyl-tRNA--protein transferase Aat, at 1,304,810 to 1,305,442 _c12590 PGA1_c12600: PGA1_c12600 - biotin carboxylase AccA, at 1,305,561 to 1,306,913 _c12600 Position (kb) 1304 1305 1306Strain fitness (log2 ratio) -3 -2 -1 0 1at 1303.957 kb on + strandat 1304.022 kb on - strandat 1304.045 kb on + strandat 1304.066 kb on + strandat 1304.168 kb on + strand, within PGA1_c12570at 1304.234 kb on + strand, within PGA1_c12570at 1304.242 kb on - strand, within PGA1_c12570at 1304.325 kb on - strand, within PGA1_c12570at 1304.335 kb on + strand, within PGA1_c12570at 1304.473 kb on + strandat 1304.476 kb on - strandat 1304.481 kb on - strandat 1304.510 kb on - strandat 1304.591 kb on + strand, within PGA1_c12580at 1304.591 kb on + strand, within PGA1_c12580at 1304.591 kb on + strand, within PGA1_c12580at 1304.599 kb on - strand, within PGA1_c12580at 1304.706 kb on + strand, within PGA1_c12580at 1304.713 kb on + strand, within PGA1_c12580at 1304.773 kb on + strand, within PGA1_c12580at 1304.773 kb on + strand, within PGA1_c12580at 1304.773 kb on + strand, within PGA1_c12580at 1304.821 kb on + strandat 1304.938 kb on + strand, within PGA1_c12590at 1304.938 kb on + strand, within PGA1_c12590at 1304.938 kb on + strand, within PGA1_c12590at 1304.946 kb on - strand, within PGA1_c12590at 1304.946 kb on - strand, within PGA1_c12590at 1304.946 kb on - strand, within PGA1_c12590at 1304.983 kb on + strand, within PGA1_c12590at 1305.040 kb on + strand, within PGA1_c12590at 1305.083 kb on + strand, within PGA1_c12590at 1305.083 kb on + strand, within PGA1_c12590at 1305.123 kb on - strand, within PGA1_c12590at 1305.285 kb on + strand, within PGA1_c12590at 1305.285 kb on - strand, within PGA1_c12590at 1305.293 kb on - strand, within PGA1_c12590at 1305.293 kb on - strand, within PGA1_c12590at 1305.293 kb on - strand, within PGA1_c12590at 1305.293 kb on - strand, within PGA1_c12590at 1305.293 kb on - strand, within PGA1_c12590at 1305.293 kb on - strand, within PGA1_c12590at 1305.338 kb on - strand, within PGA1_c12590at 1305.359 kb on - strand, within PGA1_c12590at 1305.369 kb on - strand, within PGA1_c12590at 1305.369 kb on - strand, within PGA1_c12590at 1305.369 kb on - strand, within PGA1_c12590at 1305.424 kb on + strandat 1305.424 kb on + strandat 1305.424 kb on + strandat 1305.424 kb on + strandat 1305.432 kb on - strandat 1305.432 kb on - strandat 1305.445 kb on - strandat 1305.505 kb on + strandat 1305.513 kb on - strandat 1305.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,303,957 + -1.6
1,304,022 - +0.3
1,304,045 + -1.3
1,304,066 + +0.4
1,304,168 + PGA1_c12570 0.30 -2.9
1,304,234 + PGA1_c12570 0.45 -0.9
1,304,242 - PGA1_c12570 0.46 -1.1
1,304,325 - PGA1_c12570 0.65 +0.5
1,304,335 + PGA1_c12570 0.67 -0.0
1,304,473 + -0.5
1,304,476 - -0.1
1,304,481 - +1.0
1,304,510 - +0.4
1,304,591 + PGA1_c12580 0.29 -0.1
1,304,591 + PGA1_c12580 0.29 -0.4
1,304,591 + PGA1_c12580 0.29 -0.0
1,304,599 - PGA1_c12580 0.32 +0.3
1,304,706 + PGA1_c12580 0.61 -0.0
1,304,713 + PGA1_c12580 0.63 -0.3
1,304,773 + PGA1_c12580 0.80 +1.2
1,304,773 + PGA1_c12580 0.80 -0.1
1,304,773 + PGA1_c12580 0.80 +0.2
1,304,821 + -0.6
1,304,938 + PGA1_c12590 0.20 -0.1
1,304,938 + PGA1_c12590 0.20 -0.9
1,304,938 + PGA1_c12590 0.20 +0.6
1,304,946 - PGA1_c12590 0.21 -2.3
1,304,946 - PGA1_c12590 0.21 -0.9
1,304,946 - PGA1_c12590 0.21 -1.3
1,304,983 + PGA1_c12590 0.27 -0.6
1,305,040 + PGA1_c12590 0.36 +0.8
1,305,083 + PGA1_c12590 0.43 +0.2
1,305,083 + PGA1_c12590 0.43 -0.8
1,305,123 - PGA1_c12590 0.49 +0.1
1,305,285 + PGA1_c12590 0.75 -0.9
1,305,285 - PGA1_c12590 0.75 -1.0
1,305,293 - PGA1_c12590 0.76 -0.6
1,305,293 - PGA1_c12590 0.76 +0.1
1,305,293 - PGA1_c12590 0.76 -1.4
1,305,293 - PGA1_c12590 0.76 +0.5
1,305,293 - PGA1_c12590 0.76 -1.1
1,305,293 - PGA1_c12590 0.76 -0.3
1,305,338 - PGA1_c12590 0.83 +0.6
1,305,359 - PGA1_c12590 0.87 -2.1
1,305,369 - PGA1_c12590 0.88 +0.3
1,305,369 - PGA1_c12590 0.88 -1.0
1,305,369 - PGA1_c12590 0.88 +0.3
1,305,424 + +1.3
1,305,424 + -2.4
1,305,424 + -0.5
1,305,424 + -0.0
1,305,432 - -0.9
1,305,432 - +0.0
1,305,445 - +0.1
1,305,505 + -0.7
1,305,513 - +0.9
1,305,568 - -0.8

Or see this region's nucleotide sequence