Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11980

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c11970 and PGA1_c11980 are separated by 90 nucleotidesPGA1_c11980 and PGA1_c11990 are separated by 113 nucleotides PGA1_c11970: PGA1_c11970 - Sporulation related domain., at 1,243,450 to 1,244,772 _c11970 PGA1_c11980: PGA1_c11980 - hypothetical protein, at 1,244,863 to 1,245,873 _c11980 PGA1_c11990: PGA1_c11990 - acyl-CoA synthetase, at 1,245,987 to 1,247,615 _c11990 Position (kb) 1244 1245 1246Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1243.886 kb on + strand, within PGA1_c11970at 1243.889 kb on - strand, within PGA1_c11970at 1243.936 kb on + strand, within PGA1_c11970at 1243.989 kb on + strand, within PGA1_c11970at 1244.043 kb on + strand, within PGA1_c11970at 1244.079 kb on - strand, within PGA1_c11970at 1244.095 kb on + strand, within PGA1_c11970at 1244.095 kb on + strand, within PGA1_c11970at 1244.103 kb on - strand, within PGA1_c11970at 1244.127 kb on - strand, within PGA1_c11970at 1244.161 kb on - strand, within PGA1_c11970at 1244.163 kb on + strand, within PGA1_c11970at 1244.283 kb on - strand, within PGA1_c11970at 1244.387 kb on + strand, within PGA1_c11970at 1244.463 kb on - strand, within PGA1_c11970at 1244.531 kb on - strand, within PGA1_c11970at 1244.559 kb on - strand, within PGA1_c11970at 1244.628 kb on + strand, within PGA1_c11970at 1244.658 kb on + strandat 1244.787 kb on - strandat 1244.883 kb on + strandat 1244.891 kb on - strandat 1244.990 kb on - strand, within PGA1_c11980at 1245.048 kb on - strand, within PGA1_c11980at 1245.048 kb on - strand, within PGA1_c11980at 1245.099 kb on - strand, within PGA1_c11980at 1245.119 kb on - strand, within PGA1_c11980at 1245.263 kb on - strand, within PGA1_c11980at 1245.288 kb on + strand, within PGA1_c11980at 1245.296 kb on - strand, within PGA1_c11980at 1245.374 kb on + strand, within PGA1_c11980at 1245.399 kb on - strand, within PGA1_c11980at 1245.430 kb on - strand, within PGA1_c11980at 1245.472 kb on - strand, within PGA1_c11980at 1245.481 kb on - strand, within PGA1_c11980at 1245.533 kb on + strand, within PGA1_c11980at 1245.541 kb on - strand, within PGA1_c11980at 1245.551 kb on - strand, within PGA1_c11980at 1245.551 kb on - strand, within PGA1_c11980at 1245.763 kb on + strand, within PGA1_c11980at 1245.771 kb on - strand, within PGA1_c11980at 1245.771 kb on - strand, within PGA1_c11980at 1245.771 kb on - strand, within PGA1_c11980at 1245.789 kb on + strandat 1245.821 kb on + strandat 1245.826 kb on + strandat 1245.839 kb on + strandat 1245.839 kb on + strandat 1245.839 kb on + strandat 1245.887 kb on + strandat 1245.895 kb on - strandat 1245.946 kb on + strandat 1245.966 kb on + strandat 1245.994 kb on + strandat 1246.002 kb on - strandat 1246.002 kb on - strandat 1246.002 kb on - strandat 1246.078 kb on - strandat 1246.128 kb on + strandat 1246.135 kb on + strandat 1246.210 kb on - strand, within PGA1_c11990at 1246.215 kb on + strand, within PGA1_c11990at 1246.215 kb on + strand, within PGA1_c11990at 1246.215 kb on + strand, within PGA1_c11990at 1246.215 kb on + strand, within PGA1_c11990at 1246.223 kb on - strand, within PGA1_c11990at 1246.223 kb on - strand, within PGA1_c11990at 1246.243 kb on + strand, within PGA1_c11990at 1246.251 kb on - strand, within PGA1_c11990at 1246.356 kb on + strand, within PGA1_c11990at 1246.395 kb on - strand, within PGA1_c11990at 1246.395 kb on - strand, within PGA1_c11990at 1246.452 kb on - strand, within PGA1_c11990at 1246.532 kb on - strand, within PGA1_c11990at 1246.565 kb on + strand, within PGA1_c11990at 1246.602 kb on - strand, within PGA1_c11990at 1246.627 kb on + strand, within PGA1_c11990at 1246.627 kb on + strand, within PGA1_c11990at 1246.627 kb on + strand, within PGA1_c11990at 1246.635 kb on - strand, within PGA1_c11990at 1246.635 kb on - strand, within PGA1_c11990at 1246.635 kb on - strand, within PGA1_c11990at 1246.635 kb on - strand, within PGA1_c11990at 1246.663 kb on + strand, within PGA1_c11990at 1246.665 kb on - strand, within PGA1_c11990at 1246.671 kb on - strand, within PGA1_c11990at 1246.687 kb on + strand, within PGA1_c11990at 1246.707 kb on + strand, within PGA1_c11990at 1246.715 kb on - strand, within PGA1_c11990at 1246.715 kb on - strand, within PGA1_c11990at 1246.750 kb on + strand, within PGA1_c11990at 1246.819 kb on + strand, within PGA1_c11990

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,243,886 + PGA1_c11970 0.33 +0.1
1,243,889 - PGA1_c11970 0.33 +1.3
1,243,936 + PGA1_c11970 0.37 +0.7
1,243,989 + PGA1_c11970 0.41 +1.0
1,244,043 + PGA1_c11970 0.45 -0.4
1,244,079 - PGA1_c11970 0.48 +0.1
1,244,095 + PGA1_c11970 0.49 -1.7
1,244,095 + PGA1_c11970 0.49 -0.5
1,244,103 - PGA1_c11970 0.49 +0.2
1,244,127 - PGA1_c11970 0.51 -0.2
1,244,161 - PGA1_c11970 0.54 -0.2
1,244,163 + PGA1_c11970 0.54 -0.4
1,244,283 - PGA1_c11970 0.63 -1.1
1,244,387 + PGA1_c11970 0.71 +0.2
1,244,463 - PGA1_c11970 0.77 -0.1
1,244,531 - PGA1_c11970 0.82 -0.5
1,244,559 - PGA1_c11970 0.84 +1.0
1,244,628 + PGA1_c11970 0.89 +1.0
1,244,658 + +0.8
1,244,787 - -0.0
1,244,883 + -3.4
1,244,891 - -0.2
1,244,990 - PGA1_c11980 0.13 +0.7
1,245,048 - PGA1_c11980 0.18 -0.7
1,245,048 - PGA1_c11980 0.18 -0.9
1,245,099 - PGA1_c11980 0.23 -1.3
1,245,119 - PGA1_c11980 0.25 -0.6
1,245,263 - PGA1_c11980 0.40 -0.4
1,245,288 + PGA1_c11980 0.42 -1.9
1,245,296 - PGA1_c11980 0.43 -0.6
1,245,374 + PGA1_c11980 0.51 -1.9
1,245,399 - PGA1_c11980 0.53 -0.8
1,245,430 - PGA1_c11980 0.56 -4.0
1,245,472 - PGA1_c11980 0.60 -2.2
1,245,481 - PGA1_c11980 0.61 -1.2
1,245,533 + PGA1_c11980 0.66 -2.9
1,245,541 - PGA1_c11980 0.67 -1.6
1,245,551 - PGA1_c11980 0.68 -2.8
1,245,551 - PGA1_c11980 0.68 -2.4
1,245,763 + PGA1_c11980 0.89 -1.8
1,245,771 - PGA1_c11980 0.90 -2.0
1,245,771 - PGA1_c11980 0.90 -2.8
1,245,771 - PGA1_c11980 0.90 -0.9
1,245,789 + -2.8
1,245,821 + -0.1
1,245,826 + -1.6
1,245,839 + -1.5
1,245,839 + -1.5
1,245,839 + +0.0
1,245,887 + +2.3
1,245,895 - +0.4
1,245,946 + -0.1
1,245,966 + +0.1
1,245,994 + -0.3
1,246,002 - +0.1
1,246,002 - +0.3
1,246,002 - -0.1
1,246,078 - +1.0
1,246,128 + +0.1
1,246,135 + +0.2
1,246,210 - PGA1_c11990 0.14 +0.7
1,246,215 + PGA1_c11990 0.14 -0.2
1,246,215 + PGA1_c11990 0.14 +0.1
1,246,215 + PGA1_c11990 0.14 -0.3
1,246,215 + PGA1_c11990 0.14 -0.4
1,246,223 - PGA1_c11990 0.14 +0.4
1,246,223 - PGA1_c11990 0.14 -0.3
1,246,243 + PGA1_c11990 0.16 +0.5
1,246,251 - PGA1_c11990 0.16 -0.9
1,246,356 + PGA1_c11990 0.23 +0.2
1,246,395 - PGA1_c11990 0.25 +0.6
1,246,395 - PGA1_c11990 0.25 +0.2
1,246,452 - PGA1_c11990 0.29 -1.4
1,246,532 - PGA1_c11990 0.33 +0.5
1,246,565 + PGA1_c11990 0.35 -0.0
1,246,602 - PGA1_c11990 0.38 +0.8
1,246,627 + PGA1_c11990 0.39 -0.1
1,246,627 + PGA1_c11990 0.39 -0.8
1,246,627 + PGA1_c11990 0.39 +0.8
1,246,635 - PGA1_c11990 0.40 +0.5
1,246,635 - PGA1_c11990 0.40 -1.6
1,246,635 - PGA1_c11990 0.40 +1.2
1,246,635 - PGA1_c11990 0.40 +0.3
1,246,663 + PGA1_c11990 0.41 -0.3
1,246,665 - PGA1_c11990 0.42 -2.9
1,246,671 - PGA1_c11990 0.42 +0.6
1,246,687 + PGA1_c11990 0.43 +0.7
1,246,707 + PGA1_c11990 0.44 +0.7
1,246,715 - PGA1_c11990 0.45 +1.1
1,246,715 - PGA1_c11990 0.45 -1.9
1,246,750 + PGA1_c11990 0.47 -1.1
1,246,819 + PGA1_c11990 0.51 -0.4

Or see this region's nucleotide sequence