Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11970 and PGA1_c11980 are separated by 90 nucleotides PGA1_c11980 and PGA1_c11990 are separated by 113 nucleotides
PGA1_c11970: PGA1_c11970 - Sporulation related domain., at 1,243,450 to 1,244,772
_c11970
PGA1_c11980: PGA1_c11980 - hypothetical protein, at 1,244,863 to 1,245,873
_c11980
PGA1_c11990: PGA1_c11990 - acyl-CoA synthetase, at 1,245,987 to 1,247,615
_c11990
Position (kb)
1244
1245
1246 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1243.886 kb on + strand, within PGA1_c11970 at 1243.889 kb on - strand, within PGA1_c11970 at 1243.936 kb on + strand, within PGA1_c11970 at 1243.989 kb on + strand, within PGA1_c11970 at 1244.043 kb on + strand, within PGA1_c11970 at 1244.079 kb on - strand, within PGA1_c11970 at 1244.095 kb on + strand, within PGA1_c11970 at 1244.095 kb on + strand, within PGA1_c11970 at 1244.103 kb on - strand, within PGA1_c11970 at 1244.127 kb on - strand, within PGA1_c11970 at 1244.161 kb on - strand, within PGA1_c11970 at 1244.163 kb on + strand, within PGA1_c11970 at 1244.283 kb on - strand, within PGA1_c11970 at 1244.387 kb on + strand, within PGA1_c11970 at 1244.463 kb on - strand, within PGA1_c11970 at 1244.531 kb on - strand, within PGA1_c11970 at 1244.559 kb on - strand, within PGA1_c11970 at 1244.628 kb on + strand, within PGA1_c11970 at 1244.658 kb on + strand at 1244.787 kb on - strand at 1244.883 kb on + strand at 1244.891 kb on - strand at 1244.990 kb on - strand, within PGA1_c11980 at 1245.048 kb on - strand, within PGA1_c11980 at 1245.048 kb on - strand, within PGA1_c11980 at 1245.099 kb on - strand, within PGA1_c11980 at 1245.119 kb on - strand, within PGA1_c11980 at 1245.263 kb on - strand, within PGA1_c11980 at 1245.288 kb on + strand, within PGA1_c11980 at 1245.296 kb on - strand, within PGA1_c11980 at 1245.374 kb on + strand, within PGA1_c11980 at 1245.399 kb on - strand, within PGA1_c11980 at 1245.430 kb on - strand, within PGA1_c11980 at 1245.472 kb on - strand, within PGA1_c11980 at 1245.481 kb on - strand, within PGA1_c11980 at 1245.533 kb on + strand, within PGA1_c11980 at 1245.541 kb on - strand, within PGA1_c11980 at 1245.551 kb on - strand, within PGA1_c11980 at 1245.551 kb on - strand, within PGA1_c11980 at 1245.763 kb on + strand, within PGA1_c11980 at 1245.771 kb on - strand, within PGA1_c11980 at 1245.771 kb on - strand, within PGA1_c11980 at 1245.771 kb on - strand, within PGA1_c11980 at 1245.789 kb on + strand at 1245.821 kb on + strand at 1245.826 kb on + strand at 1245.839 kb on + strand at 1245.839 kb on + strand at 1245.839 kb on + strand at 1245.887 kb on + strand at 1245.895 kb on - strand at 1245.946 kb on + strand at 1245.966 kb on + strand at 1245.994 kb on + strand at 1246.002 kb on - strand at 1246.002 kb on - strand at 1246.002 kb on - strand at 1246.078 kb on - strand at 1246.128 kb on + strand at 1246.135 kb on + strand at 1246.210 kb on - strand, within PGA1_c11990 at 1246.215 kb on + strand, within PGA1_c11990 at 1246.215 kb on + strand, within PGA1_c11990 at 1246.215 kb on + strand, within PGA1_c11990 at 1246.215 kb on + strand, within PGA1_c11990 at 1246.223 kb on - strand, within PGA1_c11990 at 1246.223 kb on - strand, within PGA1_c11990 at 1246.243 kb on + strand, within PGA1_c11990 at 1246.251 kb on - strand, within PGA1_c11990 at 1246.356 kb on + strand, within PGA1_c11990 at 1246.395 kb on - strand, within PGA1_c11990 at 1246.395 kb on - strand, within PGA1_c11990 at 1246.452 kb on - strand, within PGA1_c11990 at 1246.532 kb on - strand, within PGA1_c11990 at 1246.565 kb on + strand, within PGA1_c11990 at 1246.602 kb on - strand, within PGA1_c11990 at 1246.627 kb on + strand, within PGA1_c11990 at 1246.627 kb on + strand, within PGA1_c11990 at 1246.627 kb on + strand, within PGA1_c11990 at 1246.635 kb on - strand, within PGA1_c11990 at 1246.635 kb on - strand, within PGA1_c11990 at 1246.635 kb on - strand, within PGA1_c11990 at 1246.635 kb on - strand, within PGA1_c11990 at 1246.663 kb on + strand, within PGA1_c11990 at 1246.665 kb on - strand, within PGA1_c11990 at 1246.671 kb on - strand, within PGA1_c11990 at 1246.687 kb on + strand, within PGA1_c11990 at 1246.707 kb on + strand, within PGA1_c11990 at 1246.715 kb on - strand, within PGA1_c11990 at 1246.715 kb on - strand, within PGA1_c11990 at 1246.750 kb on + strand, within PGA1_c11990 at 1246.819 kb on + strand, within PGA1_c11990
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 1,243,886 + PGA1_c11970 0.33 +0.1 1,243,889 - PGA1_c11970 0.33 +1.3 1,243,936 + PGA1_c11970 0.37 +0.7 1,243,989 + PGA1_c11970 0.41 +1.0 1,244,043 + PGA1_c11970 0.45 -0.4 1,244,079 - PGA1_c11970 0.48 +0.1 1,244,095 + PGA1_c11970 0.49 -1.7 1,244,095 + PGA1_c11970 0.49 -0.5 1,244,103 - PGA1_c11970 0.49 +0.2 1,244,127 - PGA1_c11970 0.51 -0.2 1,244,161 - PGA1_c11970 0.54 -0.2 1,244,163 + PGA1_c11970 0.54 -0.4 1,244,283 - PGA1_c11970 0.63 -1.1 1,244,387 + PGA1_c11970 0.71 +0.2 1,244,463 - PGA1_c11970 0.77 -0.1 1,244,531 - PGA1_c11970 0.82 -0.5 1,244,559 - PGA1_c11970 0.84 +1.0 1,244,628 + PGA1_c11970 0.89 +1.0 1,244,658 + +0.8 1,244,787 - -0.0 1,244,883 + -3.4 1,244,891 - -0.2 1,244,990 - PGA1_c11980 0.13 +0.7 1,245,048 - PGA1_c11980 0.18 -0.7 1,245,048 - PGA1_c11980 0.18 -0.9 1,245,099 - PGA1_c11980 0.23 -1.3 1,245,119 - PGA1_c11980 0.25 -0.6 1,245,263 - PGA1_c11980 0.40 -0.4 1,245,288 + PGA1_c11980 0.42 -1.9 1,245,296 - PGA1_c11980 0.43 -0.6 1,245,374 + PGA1_c11980 0.51 -1.9 1,245,399 - PGA1_c11980 0.53 -0.8 1,245,430 - PGA1_c11980 0.56 -4.0 1,245,472 - PGA1_c11980 0.60 -2.2 1,245,481 - PGA1_c11980 0.61 -1.2 1,245,533 + PGA1_c11980 0.66 -2.9 1,245,541 - PGA1_c11980 0.67 -1.6 1,245,551 - PGA1_c11980 0.68 -2.8 1,245,551 - PGA1_c11980 0.68 -2.4 1,245,763 + PGA1_c11980 0.89 -1.8 1,245,771 - PGA1_c11980 0.90 -2.0 1,245,771 - PGA1_c11980 0.90 -2.8 1,245,771 - PGA1_c11980 0.90 -0.9 1,245,789 + -2.8 1,245,821 + -0.1 1,245,826 + -1.6 1,245,839 + -1.5 1,245,839 + -1.5 1,245,839 + +0.0 1,245,887 + +2.3 1,245,895 - +0.4 1,245,946 + -0.1 1,245,966 + +0.1 1,245,994 + -0.3 1,246,002 - +0.1 1,246,002 - +0.3 1,246,002 - -0.1 1,246,078 - +1.0 1,246,128 + +0.1 1,246,135 + +0.2 1,246,210 - PGA1_c11990 0.14 +0.7 1,246,215 + PGA1_c11990 0.14 -0.2 1,246,215 + PGA1_c11990 0.14 +0.1 1,246,215 + PGA1_c11990 0.14 -0.3 1,246,215 + PGA1_c11990 0.14 -0.4 1,246,223 - PGA1_c11990 0.14 +0.4 1,246,223 - PGA1_c11990 0.14 -0.3 1,246,243 + PGA1_c11990 0.16 +0.5 1,246,251 - PGA1_c11990 0.16 -0.9 1,246,356 + PGA1_c11990 0.23 +0.2 1,246,395 - PGA1_c11990 0.25 +0.6 1,246,395 - PGA1_c11990 0.25 +0.2 1,246,452 - PGA1_c11990 0.29 -1.4 1,246,532 - PGA1_c11990 0.33 +0.5 1,246,565 + PGA1_c11990 0.35 -0.0 1,246,602 - PGA1_c11990 0.38 +0.8 1,246,627 + PGA1_c11990 0.39 -0.1 1,246,627 + PGA1_c11990 0.39 -0.8 1,246,627 + PGA1_c11990 0.39 +0.8 1,246,635 - PGA1_c11990 0.40 +0.5 1,246,635 - PGA1_c11990 0.40 -1.6 1,246,635 - PGA1_c11990 0.40 +1.2 1,246,635 - PGA1_c11990 0.40 +0.3 1,246,663 + PGA1_c11990 0.41 -0.3 1,246,665 - PGA1_c11990 0.42 -2.9 1,246,671 - PGA1_c11990 0.42 +0.6 1,246,687 + PGA1_c11990 0.43 +0.7 1,246,707 + PGA1_c11990 0.44 +0.7 1,246,715 - PGA1_c11990 0.45 +1.1 1,246,715 - PGA1_c11990 0.45 -1.9 1,246,750 + PGA1_c11990 0.47 -1.1 1,246,819 + PGA1_c11990 0.51 -0.4
Or see this region's nucleotide sequence