Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_984 and HP15_985 are separated by 113 nucleotides HP15_985 and HP15_986 overlap by 4 nucleotides HP15_986 and HP15_987 overlap by 4 nucleotides HP15_987 and HP15_988 are separated by 22 nucleotides
HP15_984: HP15_984 - transcriptional regulator, LysR family protein, at 994,069 to 994,938
_984
HP15_985: HP15_985 - glutathione-dependent formaldehyde-activating, GFA, at 995,052 to 995,402
_985
HP15_986: HP15_986 - beta-lactamase, at 995,399 to 996,613
_986
HP15_987: HP15_987 - conserved hypothetical protein, at 996,610 to 997,536
_987
HP15_988: HP15_988 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein, at 997,559 to 998,374
_988
Position (kb) 995
996
997 Strain fitness (log2 ratio) -1
0
1
2 at 994.533 kb on - strand, within HP15_984 at 994.571 kb on - strand, within HP15_984 at 994.690 kb on - strand, within HP15_984 at 994.754 kb on + strand, within HP15_984 at 994.800 kb on - strand, within HP15_984 at 994.818 kb on + strand, within HP15_984 at 994.818 kb on + strand, within HP15_984 at 994.818 kb on + strand, within HP15_984 at 994.818 kb on + strand, within HP15_984 at 994.826 kb on - strand, within HP15_984 at 994.826 kb on - strand, within HP15_984 at 994.826 kb on - strand, within HP15_984 at 994.850 kb on + strand, within HP15_984 at 995.100 kb on + strand, within HP15_985 at 995.199 kb on + strand, within HP15_985 at 995.246 kb on + strand, within HP15_985 at 995.337 kb on - strand, within HP15_985 at 995.416 kb on + strand at 995.438 kb on - strand at 995.456 kb on - strand at 995.478 kb on - strand at 995.518 kb on - strand at 995.690 kb on - strand, within HP15_986 at 995.713 kb on - strand, within HP15_986 at 995.813 kb on - strand, within HP15_986 at 995.900 kb on + strand, within HP15_986 at 995.916 kb on + strand, within HP15_986 at 995.970 kb on + strand, within HP15_986 at 995.988 kb on + strand, within HP15_986 at 996.055 kb on + strand, within HP15_986 at 996.063 kb on - strand, within HP15_986 at 996.171 kb on - strand, within HP15_986 at 996.375 kb on + strand, within HP15_986 at 996.645 kb on + strand at 996.660 kb on + strand at 996.729 kb on - strand, within HP15_987 at 996.791 kb on - strand, within HP15_987 at 996.791 kb on - strand, within HP15_987 at 996.791 kb on - strand, within HP15_987 at 996.861 kb on - strand, within HP15_987 at 996.971 kb on + strand, within HP15_987 at 996.979 kb on - strand, within HP15_987 at 996.979 kb on - strand, within HP15_987 at 997.116 kb on - strand, within HP15_987 at 997.278 kb on - strand, within HP15_987 at 997.395 kb on - strand, within HP15_987 at 997.468 kb on - strand at 997.470 kb on + strand at 997.470 kb on + strand at 997.478 kb on - strand at 997.478 kb on - strand at 997.485 kb on + strand at 997.487 kb on + strand at 997.494 kb on + strand at 997.518 kb on + strand at 997.519 kb on - strand at 997.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 994,533 - HP15_984 0.53 -0.1 994,571 - HP15_984 0.58 +1.2 994,690 - HP15_984 0.71 -0.1 994,754 + HP15_984 0.79 -0.3 994,800 - HP15_984 0.84 -0.2 994,818 + HP15_984 0.86 -0.6 994,818 + HP15_984 0.86 +0.1 994,818 + HP15_984 0.86 +1.7 994,818 + HP15_984 0.86 -0.4 994,826 - HP15_984 0.87 -0.0 994,826 - HP15_984 0.87 +2.3 994,826 - HP15_984 0.87 +0.2 994,850 + HP15_984 0.90 -0.0 995,100 + HP15_985 0.14 -1.2 995,199 + HP15_985 0.42 -0.7 995,246 + HP15_985 0.55 -0.1 995,337 - HP15_985 0.81 +1.6 995,416 + +0.8 995,438 - +0.4 995,456 - -0.6 995,478 - +0.8 995,518 - +0.6 995,690 - HP15_986 0.24 +1.6 995,713 - HP15_986 0.26 +0.7 995,813 - HP15_986 0.34 +1.7 995,900 + HP15_986 0.41 +0.2 995,916 + HP15_986 0.43 +0.3 995,970 + HP15_986 0.47 +1.7 995,988 + HP15_986 0.48 -0.4 996,055 + HP15_986 0.54 -1.4 996,063 - HP15_986 0.55 +0.5 996,171 - HP15_986 0.64 +1.7 996,375 + HP15_986 0.80 +1.7 996,645 + +1.4 996,660 + -1.0 996,729 - HP15_987 0.13 -0.2 996,791 - HP15_987 0.20 -0.3 996,791 - HP15_987 0.20 -0.7 996,791 - HP15_987 0.20 +1.2 996,861 - HP15_987 0.27 +0.3 996,971 + HP15_987 0.39 +2.0 996,979 - HP15_987 0.40 -0.6 996,979 - HP15_987 0.40 -0.6 997,116 - HP15_987 0.55 +1.5 997,278 - HP15_987 0.72 -0.1 997,395 - HP15_987 0.85 +0.4 997,468 - +1.7 997,470 + +0.4 997,470 + +1.7 997,478 - +0.6 997,478 - +1.5 997,485 + +0.3 997,487 + +0.0 997,494 + +1.8 997,518 + -1.3 997,519 - +1.8 997,588 - -0.2
Or see this region's nucleotide sequence