Experiment: Cisplatin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2946 and SO2947 are separated by 2 nucleotides SO2947 and SO2948 are separated by 82 nucleotides SO2948 and SO2949 are separated by 51 nucleotides SO2949 and SO2950 overlap by 8 nucleotides
SO2946: SO2946 - hypothetical protein (NCBI ptt file), at 3,084,700 to 3,085,488
SO2946
SO2947: SO2947 - hypothetical protein (NCBI ptt file), at 3,085,491 to 3,085,763
SO2947
SO2948: SO2948 - prophage LambdaSo, tail assembly protein K, putative (NCBI ptt file), at 3,085,846 to 3,086,559
SO2948
SO2949: SO2949 - prophage LambdaSo, minor tail protein L (NCBI ptt file), at 3,086,611 to 3,087,336
SO2949
SO2950: SO2950 - hypothetical protein (NCBI ptt file), at 3,087,329 to 3,087,988
SO2950
Position (kb)
3085
3086
3087 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3084.853 kb on - strand, within SO2946 at 3084.853 kb on - strand, within SO2946 at 3084.857 kb on + strand, within SO2946 at 3084.891 kb on - strand, within SO2946 at 3084.902 kb on - strand, within SO2946 at 3084.902 kb on - strand, within SO2946 at 3084.952 kb on - strand, within SO2946 at 3084.969 kb on - strand, within SO2946 at 3085.094 kb on + strand, within SO2946 at 3085.094 kb on + strand, within SO2946 at 3085.096 kb on + strand, within SO2946 at 3085.154 kb on - strand, within SO2946 at 3085.191 kb on + strand, within SO2946 at 3085.221 kb on - strand, within SO2946 at 3085.234 kb on - strand, within SO2946 at 3085.305 kb on + strand, within SO2946 at 3085.305 kb on + strand, within SO2946 at 3085.305 kb on + strand, within SO2946 at 3085.313 kb on - strand, within SO2946 at 3085.313 kb on - strand, within SO2946 at 3085.402 kb on + strand, within SO2946 at 3085.402 kb on + strand, within SO2946 at 3085.402 kb on - strand, within SO2946 at 3085.445 kb on + strand at 3085.501 kb on + strand at 3085.561 kb on + strand, within SO2947 at 3085.569 kb on - strand, within SO2947 at 3085.596 kb on - strand, within SO2947 at 3085.791 kb on - strand at 3085.918 kb on - strand, within SO2948 at 3085.920 kb on - strand, within SO2948 at 3085.979 kb on - strand, within SO2948 at 3086.080 kb on + strand, within SO2948 at 3086.192 kb on + strand, within SO2948 at 3086.209 kb on + strand, within SO2948 at 3086.219 kb on + strand, within SO2948 at 3086.227 kb on - strand, within SO2948 at 3086.292 kb on - strand, within SO2948 at 3086.372 kb on + strand, within SO2948 at 3086.615 kb on + strand at 3086.638 kb on - strand at 3086.647 kb on + strand at 3086.706 kb on + strand, within SO2949 at 3086.709 kb on - strand, within SO2949 at 3086.715 kb on - strand, within SO2949 at 3086.720 kb on - strand, within SO2949 at 3086.810 kb on - strand, within SO2949 at 3086.876 kb on - strand, within SO2949 at 3086.893 kb on - strand, within SO2949 at 3087.008 kb on + strand, within SO2949 at 3087.019 kb on + strand, within SO2949 at 3087.128 kb on - strand, within SO2949 at 3087.128 kb on - strand, within SO2949 at 3087.138 kb on + strand, within SO2949 at 3087.149 kb on + strand, within SO2949 at 3087.162 kb on - strand, within SO2949 at 3087.306 kb on + strand at 3087.306 kb on + strand at 3087.306 kb on + strand at 3087.306 kb on + strand at 3087.306 kb on + strand at 3087.314 kb on - strand at 3087.314 kb on - strand at 3087.376 kb on + strand at 3087.376 kb on + strand at 3087.383 kb on + strand at 3087.384 kb on - strand at 3087.384 kb on - strand at 3087.384 kb on - strand at 3087.384 kb on - strand at 3087.477 kb on - strand, within SO2950 at 3087.477 kb on - strand, within SO2950
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.002 mg/ml remove 3,084,853 - SO2946 0.19 +2.2 3,084,853 - SO2946 0.19 +0.4 3,084,857 + SO2946 0.20 +1.7 3,084,891 - SO2946 0.24 +1.0 3,084,902 - SO2946 0.26 +1.6 3,084,902 - SO2946 0.26 +2.1 3,084,952 - SO2946 0.32 +2.3 3,084,969 - SO2946 0.34 +2.7 3,085,094 + SO2946 0.50 +2.0 3,085,094 + SO2946 0.50 +2.6 3,085,096 + SO2946 0.50 +1.5 3,085,154 - SO2946 0.58 +2.4 3,085,191 + SO2946 0.62 +1.4 3,085,221 - SO2946 0.66 +2.0 3,085,234 - SO2946 0.68 +2.7 3,085,305 + SO2946 0.77 +2.2 3,085,305 + SO2946 0.77 +2.0 3,085,305 + SO2946 0.77 +2.2 3,085,313 - SO2946 0.78 +1.4 3,085,313 - SO2946 0.78 +1.9 3,085,402 + SO2946 0.89 +2.3 3,085,402 + SO2946 0.89 +2.3 3,085,402 - SO2946 0.89 +1.8 3,085,445 + +1.4 3,085,501 + +2.0 3,085,561 + SO2947 0.26 +1.4 3,085,569 - SO2947 0.29 +0.7 3,085,596 - SO2947 0.38 +2.6 3,085,791 - +1.1 3,085,918 - SO2948 0.10 +2.6 3,085,920 - SO2948 0.10 +1.8 3,085,979 - SO2948 0.19 +1.3 3,086,080 + SO2948 0.33 +1.6 3,086,192 + SO2948 0.48 +2.8 3,086,209 + SO2948 0.51 +1.9 3,086,219 + SO2948 0.52 +0.9 3,086,227 - SO2948 0.53 +2.5 3,086,292 - SO2948 0.62 +1.8 3,086,372 + SO2948 0.74 +1.5 3,086,615 + +2.3 3,086,638 - -1.8 3,086,647 + +1.9 3,086,706 + SO2949 0.13 +1.4 3,086,709 - SO2949 0.13 +1.7 3,086,715 - SO2949 0.14 +2.5 3,086,720 - SO2949 0.15 +2.3 3,086,810 - SO2949 0.27 +1.8 3,086,876 - SO2949 0.37 +2.5 3,086,893 - SO2949 0.39 +2.0 3,087,008 + SO2949 0.55 +2.6 3,087,019 + SO2949 0.56 +1.4 3,087,128 - SO2949 0.71 +2.2 3,087,128 - SO2949 0.71 +1.9 3,087,138 + SO2949 0.73 +2.0 3,087,149 + SO2949 0.74 +2.4 3,087,162 - SO2949 0.76 +0.8 3,087,306 + +2.0 3,087,306 + +2.4 3,087,306 + +1.9 3,087,306 + +1.5 3,087,306 + +1.8 3,087,314 - +2.9 3,087,314 - +2.8 3,087,376 + +2.2 3,087,376 + +2.4 3,087,383 + +2.1 3,087,384 - +2.3 3,087,384 - +2.1 3,087,384 - +2.5 3,087,384 - +3.9 3,087,477 - SO2950 0.22 +2.3 3,087,477 - SO2950 0.22 +2.3
Or see this region's nucleotide sequence