Experiment: Cisplatin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2688 and SO2689 are separated by 31 nucleotides SO2689 and SO2690 are separated by 53 nucleotides SO2690 and SO2691 overlap by 4 nucleotides SO2691 and SO2692 are separated by 16 nucleotides SO2692 and SO2693 are separated by 2 nucleotides
SO2688: SO2688 - hypothetical protein (NCBI ptt file), at 2,809,460 to 2,810,119
SO2688
SO2689: SO2689 - conserved hypothetical protein (NCBI ptt file), at 2,810,151 to 2,810,582
SO2689
SO2690: SO2690 - prophage MuSo2, virion morphogenesis protein, putative (NCBI ptt file), at 2,810,636 to 2,811,133
SO2690
SO2691: SO2691 - hypothetical protein (NCBI ptt file), at 2,811,130 to 2,811,720
SO2691
SO2692: SO2692 - conserved hypothetical protein (NCBI ptt file), at 2,811,737 to 2,811,901
SO2692
SO2693: SO2693 - prophage MuSo2, tail sheath protein, putative (NCBI ptt file), at 2,811,904 to 2,813,385
SO2693
Position (kb)
2810
2811
2812 Strain fitness (log2 ratio)
-1
0
1
2 at 2809.636 kb on + strand, within SO2688 at 2809.702 kb on + strand, within SO2688 at 2809.702 kb on + strand, within SO2688 at 2809.710 kb on - strand, within SO2688 at 2809.710 kb on - strand, within SO2688 at 2809.766 kb on - strand, within SO2688 at 2809.771 kb on - strand, within SO2688 at 2809.906 kb on - strand, within SO2688 at 2809.911 kb on - strand, within SO2688 at 2810.028 kb on - strand, within SO2688 at 2810.039 kb on + strand, within SO2688 at 2810.069 kb on - strand at 2810.105 kb on - strand at 2810.169 kb on + strand at 2810.178 kb on - strand at 2810.310 kb on + strand, within SO2689 at 2810.313 kb on - strand, within SO2689 at 2810.315 kb on + strand, within SO2689 at 2810.324 kb on - strand, within SO2689 at 2810.336 kb on - strand, within SO2689 at 2810.541 kb on - strand at 2810.541 kb on - strand at 2810.595 kb on - strand at 2810.607 kb on - strand at 2810.610 kb on - strand at 2810.610 kb on - strand at 2810.630 kb on - strand at 2810.630 kb on - strand at 2810.633 kb on - strand at 2810.645 kb on - strand at 2810.666 kb on + strand at 2810.674 kb on + strand at 2810.767 kb on + strand, within SO2690 at 2810.784 kb on + strand, within SO2690 at 2810.817 kb on - strand, within SO2690 at 2810.840 kb on + strand, within SO2690 at 2810.887 kb on + strand, within SO2690 at 2810.887 kb on + strand, within SO2690 at 2810.895 kb on - strand, within SO2690 at 2810.895 kb on - strand, within SO2690 at 2810.957 kb on + strand, within SO2690 at 2810.975 kb on + strand, within SO2690 at 2810.975 kb on + strand, within SO2690 at 2810.983 kb on - strand, within SO2690 at 2810.983 kb on - strand, within SO2690 at 2811.086 kb on + strand at 2811.105 kb on - strand at 2811.132 kb on + strand at 2811.152 kb on + strand at 2811.172 kb on - strand at 2811.214 kb on + strand, within SO2691 at 2811.356 kb on - strand, within SO2691 at 2811.480 kb on + strand, within SO2691 at 2811.502 kb on + strand, within SO2691 at 2811.632 kb on + strand, within SO2691 at 2811.671 kb on - strand at 2811.849 kb on + strand, within SO2692 at 2811.978 kb on + strand at 2811.989 kb on - strand at 2812.055 kb on + strand, within SO2693 at 2812.062 kb on - strand, within SO2693 at 2812.063 kb on - strand, within SO2693 at 2812.127 kb on + strand, within SO2693 at 2812.127 kb on + strand, within SO2693 at 2812.127 kb on + strand, within SO2693 at 2812.127 kb on + strand, within SO2693
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.002 mg/ml remove 2,809,636 + SO2688 0.27 +1.0 2,809,702 + SO2688 0.37 +1.3 2,809,702 + SO2688 0.37 +1.1 2,809,710 - SO2688 0.38 +1.2 2,809,710 - SO2688 0.38 +1.3 2,809,766 - SO2688 0.46 +0.7 2,809,771 - SO2688 0.47 -0.0 2,809,906 - SO2688 0.68 +1.4 2,809,911 - SO2688 0.68 +1.4 2,810,028 - SO2688 0.86 +0.7 2,810,039 + SO2688 0.88 +0.1 2,810,069 - +1.2 2,810,105 - +1.1 2,810,169 + +1.1 2,810,178 - +1.0 2,810,310 + SO2689 0.37 +0.3 2,810,313 - SO2689 0.38 +1.2 2,810,315 + SO2689 0.38 +1.2 2,810,324 - SO2689 0.40 +0.8 2,810,336 - SO2689 0.43 +1.7 2,810,541 - +1.9 2,810,541 - +1.6 2,810,595 - +1.2 2,810,607 - -0.8 2,810,610 - +0.9 2,810,610 - +2.3 2,810,630 - +1.1 2,810,630 - +1.2 2,810,633 - +0.4 2,810,645 - -0.1 2,810,666 + +0.7 2,810,674 + +1.4 2,810,767 + SO2690 0.26 +1.1 2,810,784 + SO2690 0.30 +1.1 2,810,817 - SO2690 0.36 +0.2 2,810,840 + SO2690 0.41 +0.7 2,810,887 + SO2690 0.50 +1.0 2,810,887 + SO2690 0.50 +0.6 2,810,895 - SO2690 0.52 +1.0 2,810,895 - SO2690 0.52 -1.0 2,810,957 + SO2690 0.64 +0.7 2,810,975 + SO2690 0.68 +0.0 2,810,975 + SO2690 0.68 +0.7 2,810,983 - SO2690 0.70 +1.2 2,810,983 - SO2690 0.70 +1.3 2,811,086 + -0.7 2,811,105 - +0.4 2,811,132 + +1.6 2,811,152 + +0.9 2,811,172 - +1.2 2,811,214 + SO2691 0.14 +0.3 2,811,356 - SO2691 0.38 +1.2 2,811,480 + SO2691 0.59 +1.4 2,811,502 + SO2691 0.63 +1.4 2,811,632 + SO2691 0.85 +1.1 2,811,671 - +1.8 2,811,849 + SO2692 0.68 +1.1 2,811,978 + +1.2 2,811,989 - +0.7 2,812,055 + SO2693 0.10 +1.7 2,812,062 - SO2693 0.11 +0.7 2,812,063 - SO2693 0.11 +1.9 2,812,127 + SO2693 0.15 +1.8 2,812,127 + SO2693 0.15 +1.2 2,812,127 + SO2693 0.15 +1.4 2,812,127 + SO2693 0.15 +1.1
Or see this region's nucleotide sequence