Experiment: Cisplatin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0614 and SO0615 are separated by 187 nucleotides SO0615 and SO0616 are separated by 55 nucleotides
SO0614: SO0614 - dipeptidyl peptidase IV, putative (NCBI ptt file), at 638,364 to 640,844
SO0614
SO0615: SO0615 - hypothetical protein (NCBI ptt file), at 641,032 to 642,177
SO0615
SO0616: SO0616 - esterase, putative (NCBI ptt file), at 642,233 to 643,144
SO0616
Position (kb) 641
642
643 Strain fitness (log2 ratio) -1
0
1
2 at 640.039 kb on + strand, within SO0614 at 640.174 kb on + strand, within SO0614 at 640.174 kb on + strand, within SO0614 at 640.237 kb on + strand, within SO0614 at 640.263 kb on + strand, within SO0614 at 640.270 kb on + strand, within SO0614 at 640.308 kb on + strand, within SO0614 at 640.432 kb on - strand, within SO0614 at 640.462 kb on + strand, within SO0614 at 640.539 kb on - strand, within SO0614 at 640.639 kb on + strand at 640.659 kb on + strand at 640.707 kb on - strand at 640.709 kb on + strand at 640.758 kb on + strand at 640.866 kb on - strand at 640.870 kb on + strand at 640.925 kb on + strand at 640.951 kb on - strand at 641.032 kb on - strand at 641.055 kb on + strand at 641.110 kb on - strand at 641.129 kb on + strand at 641.137 kb on - strand at 641.137 kb on - strand at 641.137 kb on - strand at 641.268 kb on + strand, within SO0615 at 641.280 kb on + strand, within SO0615 at 641.401 kb on - strand, within SO0615 at 641.408 kb on - strand, within SO0615 at 641.415 kb on - strand, within SO0615 at 641.462 kb on - strand, within SO0615 at 641.491 kb on - strand, within SO0615 at 641.492 kb on + strand, within SO0615 at 641.492 kb on + strand, within SO0615 at 641.492 kb on + strand, within SO0615 at 641.613 kb on + strand, within SO0615 at 641.613 kb on + strand, within SO0615 at 641.621 kb on - strand, within SO0615 at 641.621 kb on - strand, within SO0615 at 641.703 kb on - strand, within SO0615 at 641.706 kb on + strand, within SO0615 at 641.749 kb on - strand, within SO0615 at 641.764 kb on - strand, within SO0615 at 641.830 kb on + strand, within SO0615 at 642.035 kb on - strand, within SO0615 at 642.043 kb on + strand, within SO0615 at 642.062 kb on - strand, within SO0615 at 642.138 kb on - strand at 642.198 kb on + strand at 642.298 kb on - strand at 642.751 kb on + strand, within SO0616 at 642.847 kb on - strand, within SO0616 at 642.864 kb on + strand, within SO0616 at 642.864 kb on + strand at 642.935 kb on + strand, within SO0616 at 642.981 kb on + strand, within SO0616
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.002 mg/ml remove 640,039 + SO0614 0.68 +0.3 640,174 + SO0614 0.73 +0.0 640,174 + SO0614 0.73 -0.1 640,237 + SO0614 0.75 +0.3 640,263 + SO0614 0.77 -0.4 640,270 + SO0614 0.77 -0.9 640,308 + SO0614 0.78 -0.6 640,432 - SO0614 0.83 +0.9 640,462 + SO0614 0.85 -0.6 640,539 - SO0614 0.88 +0.9 640,639 + -0.5 640,659 + +0.2 640,707 - -0.4 640,709 + +1.1 640,758 + -1.0 640,866 - +0.1 640,870 + -0.0 640,925 + +0.5 640,951 - -0.2 641,032 - -0.8 641,055 + -0.9 641,110 - +0.5 641,129 + -0.1 641,137 - -1.5 641,137 - +0.6 641,137 - -0.2 641,268 + SO0615 0.21 +0.4 641,280 + SO0615 0.22 +0.0 641,401 - SO0615 0.32 +0.3 641,408 - SO0615 0.33 +0.7 641,415 - SO0615 0.33 +0.2 641,462 - SO0615 0.38 -0.5 641,491 - SO0615 0.40 -1.0 641,492 + SO0615 0.40 +1.2 641,492 + SO0615 0.40 -0.0 641,492 + SO0615 0.40 +0.0 641,613 + SO0615 0.51 +0.1 641,613 + SO0615 0.51 -0.2 641,621 - SO0615 0.51 +0.3 641,621 - SO0615 0.51 -0.7 641,703 - SO0615 0.59 -0.1 641,706 + SO0615 0.59 -0.4 641,749 - SO0615 0.63 +1.6 641,764 - SO0615 0.64 +0.3 641,830 + SO0615 0.70 +0.6 642,035 - SO0615 0.88 +1.2 642,043 + SO0615 0.88 +2.6 642,062 - SO0615 0.90 +0.2 642,138 - -0.0 642,198 + +0.8 642,298 - +1.3 642,751 + SO0616 0.57 +0.0 642,847 - SO0616 0.67 +0.9 642,864 + SO0616 0.69 -0.5 642,864 + +0.3 642,935 + SO0616 0.77 +0.4 642,981 + SO0616 0.82 +0.2
Or see this region's nucleotide sequence