Experiment: Cisplatin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_0376 and SO0377 are separated by 398 nucleotides SO0377 and SO0378 are separated by 105 nucleotides SO0378 and SO0379 are separated by 39 nucleotides SO0379 and hsdR-1 are separated by 2 nucleotides
SO_0376: SO_0376 - no description, at 388,489 to 388,770
_0376
SO0377: SO0377 - hypothetical protein (NCBI ptt file), at 389,169 to 389,462
SO0377
SO0378: SO0378 - ISSod4, transposase (NCBI ptt file), at 389,568 to 390,770
SO0378
SO0379: SO0379 - conserved hypothetical protein (NCBI ptt file), at 390,810 to 391,523
SO0379
SO0380: hsdR-1 - type I restriction-modification system, R subunit (NCBI ptt file), at 391,526 to 394,627
hsdR-1
Position (kb) 389
390
391 Strain fitness (log2 ratio) -2
-1
0
1
2 at 388.600 kb on + strand, within SO_0376 at 388.600 kb on + strand, within SO_0376 at 388.607 kb on + strand, within SO_0376 at 388.607 kb on - strand, within SO_0376 at 388.625 kb on + strand, within SO_0376 at 388.668 kb on + strand, within SO_0376 at 388.690 kb on + strand, within SO_0376 at 388.870 kb on + strand at 388.877 kb on + strand at 388.895 kb on - strand at 388.919 kb on + strand at 388.934 kb on + strand at 388.974 kb on - strand at 389.049 kb on - strand at 389.056 kb on + strand at 389.158 kb on + strand at 389.186 kb on + strand at 389.186 kb on + strand at 389.188 kb on + strand at 389.188 kb on + strand at 389.188 kb on + strand at 389.188 kb on + strand at 389.194 kb on - strand at 389.194 kb on - strand at 389.194 kb on - strand at 389.194 kb on - strand at 389.196 kb on - strand at 389.196 kb on - strand at 389.196 kb on - strand at 389.267 kb on + strand, within SO0377 at 389.275 kb on - strand, within SO0377 at 389.277 kb on + strand, within SO0377 at 389.277 kb on + strand, within SO0377 at 389.277 kb on + strand, within SO0377 at 389.279 kb on + strand, within SO0377 at 389.285 kb on - strand, within SO0377 at 389.302 kb on + strand, within SO0377 at 389.325 kb on - strand, within SO0377 at 389.336 kb on + strand, within SO0377 at 389.337 kb on + strand, within SO0377 at 389.405 kb on - strand, within SO0377 at 389.407 kb on + strand, within SO0377 at 389.441 kb on + strand at 389.449 kb on - strand at 389.467 kb on + strand at 390.869 kb on + strand at 390.876 kb on - strand at 390.876 kb on - strand at 390.925 kb on - strand, within SO0379 at 390.951 kb on - strand, within SO0379 at 391.084 kb on - strand, within SO0379 at 391.089 kb on - strand, within SO0379 at 391.095 kb on - strand, within SO0379 at 391.124 kb on + strand, within SO0379 at 391.124 kb on + strand, within SO0379 at 391.134 kb on + strand, within SO0379 at 391.142 kb on - strand, within SO0379 at 391.167 kb on + strand, within SO0379 at 391.175 kb on - strand, within SO0379 at 391.219 kb on - strand, within SO0379 at 391.228 kb on - strand, within SO0379 at 391.235 kb on + strand, within SO0379 at 391.265 kb on + strand, within SO0379 at 391.323 kb on + strand, within SO0379 at 391.409 kb on - strand, within SO0379 at 391.447 kb on + strand, within SO0379 at 391.447 kb on + strand, within SO0379 at 391.486 kb on + strand at 391.486 kb on + strand at 391.486 kb on + strand at 391.486 kb on + strand at 391.494 kb on - strand at 391.494 kb on - strand at 391.494 kb on - strand at 391.494 kb on - strand at 391.517 kb on + strand at 391.571 kb on - strand at 391.576 kb on + strand at 391.581 kb on + strand at 391.584 kb on - strand at 391.682 kb on + strand at 391.690 kb on - strand at 391.711 kb on + strand at 391.712 kb on + strand at 391.712 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.002 mg/ml remove 388,600 + SO_0376 0.39 +0.8 388,600 + SO_0376 0.39 +0.5 388,607 + SO_0376 0.42 -0.6 388,607 - SO_0376 0.42 -0.1 388,625 + SO_0376 0.48 +0.6 388,668 + SO_0376 0.63 +0.4 388,690 + SO_0376 0.71 +0.7 388,870 + +0.5 388,877 + +0.6 388,895 - +0.1 388,919 + -0.2 388,934 + +0.2 388,974 - +0.1 389,049 - +0.7 389,056 + -0.2 389,158 + -0.2 389,186 + -1.8 389,186 + +0.9 389,188 + +0.0 389,188 + +1.1 389,188 + -0.4 389,188 + -0.5 389,194 - -1.4 389,194 - -0.7 389,194 - -0.3 389,194 - -0.9 389,196 - -0.6 389,196 - -0.5 389,196 - -0.4 389,267 + SO0377 0.33 +0.2 389,275 - SO0377 0.36 -0.7 389,277 + SO0377 0.37 -0.1 389,277 + SO0377 0.37 +0.6 389,277 + SO0377 0.37 +0.8 389,279 + SO0377 0.37 -0.4 389,285 - SO0377 0.39 +0.8 389,302 + SO0377 0.45 +0.2 389,325 - SO0377 0.53 -0.5 389,336 + SO0377 0.57 +0.4 389,337 + SO0377 0.57 -0.4 389,405 - SO0377 0.80 -0.0 389,407 + SO0377 0.81 +0.7 389,441 + -0.7 389,449 - -0.9 389,467 + +0.9 390,869 + -1.7 390,876 - -1.0 390,876 - -2.0 390,925 - SO0379 0.16 -1.8 390,951 - SO0379 0.20 -0.9 391,084 - SO0379 0.38 -0.6 391,089 - SO0379 0.39 +1.1 391,095 - SO0379 0.40 +1.1 391,124 + SO0379 0.44 -0.9 391,124 + SO0379 0.44 -1.5 391,134 + SO0379 0.45 -0.5 391,142 - SO0379 0.46 -1.2 391,167 + SO0379 0.50 -0.2 391,175 - SO0379 0.51 -2.4 391,219 - SO0379 0.57 +0.4 391,228 - SO0379 0.59 -1.1 391,235 + SO0379 0.60 -0.6 391,265 + SO0379 0.64 +0.7 391,323 + SO0379 0.72 -1.0 391,409 - SO0379 0.84 -1.3 391,447 + SO0379 0.89 +1.7 391,447 + SO0379 0.89 -1.0 391,486 + -2.2 391,486 + -2.0 391,486 + -1.5 391,486 + -1.9 391,494 - -1.9 391,494 - -1.6 391,494 - +0.2 391,494 - -2.1 391,517 + -0.9 391,571 - -0.4 391,576 + -0.1 391,581 + +2.1 391,584 - +1.5 391,682 + -0.7 391,690 - -0.0 391,711 + +0.1 391,712 + +0.2 391,712 + +0.9
Or see this region's nucleotide sequence