Experiment: Cisplatin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0374 and SO0375 are separated by 59 nucleotides SO0375 and SO_0376 are separated by 232 nucleotides SO_0376 and SO0377 are separated by 398 nucleotides SO0377 and SO0378 are separated by 105 nucleotides
SO0374: SO0374 - ISSod1, transposase OrfB (NCBI ptt file), at 387,097 to 387,906
SO0374
SO0375: SO0375 - ISSod1, transposase OrfA (NCBI ptt file), at 387,966 to 388,256
SO0375
SO_0376: SO_0376 - no description, at 388,489 to 388,770
_0376
SO0377: SO0377 - hypothetical protein (NCBI ptt file), at 389,169 to 389,462
SO0377
SO0378: SO0378 - ISSod4, transposase (NCBI ptt file), at 389,568 to 390,770
SO0378
Position (kb) 388
389 Strain fitness (log2 ratio) -2
-1
0
1
2 at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.314 kb on + strand at 388.327 kb on + strand at 388.341 kb on - strand at 388.349 kb on - strand at 388.351 kb on + strand at 388.351 kb on + strand at 388.359 kb on - strand at 388.359 kb on - strand at 388.466 kb on - strand at 388.468 kb on + strand at 388.468 kb on + strand at 388.476 kb on - strand at 388.476 kb on - strand at 388.476 kb on - strand at 388.527 kb on + strand, within SO_0376 at 388.527 kb on + strand, within SO_0376 at 388.527 kb on + strand, within SO_0376 at 388.535 kb on - strand, within SO_0376 at 388.535 kb on - strand, within SO_0376 at 388.537 kb on + strand, within SO_0376 at 388.600 kb on + strand, within SO_0376 at 388.600 kb on + strand, within SO_0376 at 388.607 kb on + strand, within SO_0376 at 388.607 kb on - strand, within SO_0376 at 388.625 kb on + strand, within SO_0376 at 388.668 kb on + strand, within SO_0376 at 388.690 kb on + strand, within SO_0376 at 388.870 kb on + strand at 388.877 kb on + strand at 388.895 kb on - strand at 388.919 kb on + strand at 388.934 kb on + strand at 388.974 kb on - strand at 389.049 kb on - strand at 389.056 kb on + strand at 389.158 kb on + strand at 389.186 kb on + strand at 389.186 kb on + strand at 389.188 kb on + strand at 389.188 kb on + strand at 389.188 kb on + strand at 389.188 kb on + strand at 389.194 kb on - strand at 389.194 kb on - strand at 389.194 kb on - strand at 389.194 kb on - strand at 389.196 kb on - strand at 389.196 kb on - strand at 389.196 kb on - strand at 389.267 kb on + strand, within SO0377 at 389.275 kb on - strand, within SO0377 at 389.277 kb on + strand, within SO0377 at 389.277 kb on + strand, within SO0377 at 389.277 kb on + strand, within SO0377 at 389.279 kb on + strand, within SO0377 at 389.285 kb on - strand, within SO0377 at 389.302 kb on + strand, within SO0377 at 389.325 kb on - strand, within SO0377 at 389.336 kb on + strand, within SO0377 at 389.337 kb on + strand, within SO0377 at 389.405 kb on - strand, within SO0377 at 389.407 kb on + strand, within SO0377 at 389.441 kb on + strand at 389.449 kb on - strand at 389.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.002 mg/ml remove 388,309 + +1.3 388,309 + -0.0 388,309 + -0.5 388,309 + -0.3 388,309 + -1.0 388,309 + +0.2 388,309 + +0.1 388,309 + +0.6 388,309 + +0.1 388,314 + -0.7 388,327 + -0.7 388,341 - +0.3 388,349 - -0.1 388,351 + -1.3 388,351 + +0.5 388,359 - +0.2 388,359 - -0.9 388,466 - +1.9 388,468 + +0.7 388,468 + -0.6 388,476 - +0.1 388,476 - -0.6 388,476 - -0.4 388,527 + SO_0376 0.13 -0.9 388,527 + SO_0376 0.13 -0.1 388,527 + SO_0376 0.13 +0.5 388,535 - SO_0376 0.16 +0.9 388,535 - SO_0376 0.16 +0.4 388,537 + SO_0376 0.17 +0.0 388,600 + SO_0376 0.39 +0.8 388,600 + SO_0376 0.39 +0.5 388,607 + SO_0376 0.42 -0.6 388,607 - SO_0376 0.42 -0.1 388,625 + SO_0376 0.48 +0.6 388,668 + SO_0376 0.63 +0.4 388,690 + SO_0376 0.71 +0.7 388,870 + +0.5 388,877 + +0.6 388,895 - +0.1 388,919 + -0.2 388,934 + +0.2 388,974 - +0.1 389,049 - +0.7 389,056 + -0.2 389,158 + -0.2 389,186 + -1.8 389,186 + +0.9 389,188 + +0.0 389,188 + +1.1 389,188 + -0.4 389,188 + -0.5 389,194 - -1.4 389,194 - -0.7 389,194 - -0.3 389,194 - -0.9 389,196 - -0.6 389,196 - -0.5 389,196 - -0.4 389,267 + SO0377 0.33 +0.2 389,275 - SO0377 0.36 -0.7 389,277 + SO0377 0.37 -0.1 389,277 + SO0377 0.37 +0.6 389,277 + SO0377 0.37 +0.8 389,279 + SO0377 0.37 -0.4 389,285 - SO0377 0.39 +0.8 389,302 + SO0377 0.45 +0.2 389,325 - SO0377 0.53 -0.5 389,336 + SO0377 0.57 +0.4 389,337 + SO0377 0.57 -0.4 389,405 - SO0377 0.80 -0.0 389,407 + SO0377 0.81 +0.7 389,441 + -0.7 389,449 - -0.9 389,467 + +0.9
Or see this region's nucleotide sequence