Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07310

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07300 and PGA1_c07310 are separated by 62 nucleotidesPGA1_c07310 and PGA1_c07320 are separated by 1 nucleotidesPGA1_c07320 and PGA1_c07330 are separated by 58 nucleotides PGA1_c07300: PGA1_c07300 - Inositol transport system sugar-binding protein (from data), at 751,753 to 752,703 _c07300 PGA1_c07310: PGA1_c07310 - Inositol transport system permease protein (from data), at 752,766 to 753,887 _c07310 PGA1_c07320: PGA1_c07320 - Inositol transport system ATP-binding protein (from data), at 753,889 to 754,674 _c07320 PGA1_c07330: PGA1_c07330 - beta-galactosidase 1, at 754,733 to 756,652 _c07330 Position (kb) 752 753 754Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 751.812 kb on + strandat 751.904 kb on + strand, within PGA1_c07300at 751.934 kb on - strand, within PGA1_c07300at 751.939 kb on - strand, within PGA1_c07300at 751.947 kb on + strand, within PGA1_c07300at 752.003 kb on - strand, within PGA1_c07300at 752.040 kb on - strand, within PGA1_c07300at 752.045 kb on + strand, within PGA1_c07300at 752.074 kb on + strand, within PGA1_c07300at 752.074 kb on + strand, within PGA1_c07300at 752.074 kb on + strand, within PGA1_c07300at 752.095 kb on - strand, within PGA1_c07300at 752.117 kb on + strand, within PGA1_c07300at 752.122 kb on + strand, within PGA1_c07300at 752.148 kb on + strand, within PGA1_c07300at 752.156 kb on - strand, within PGA1_c07300at 752.171 kb on - strand, within PGA1_c07300at 752.190 kb on + strand, within PGA1_c07300at 752.239 kb on - strand, within PGA1_c07300at 752.277 kb on + strand, within PGA1_c07300at 752.327 kb on - strand, within PGA1_c07300at 752.390 kb on - strand, within PGA1_c07300at 752.413 kb on - strand, within PGA1_c07300at 752.425 kb on + strand, within PGA1_c07300at 752.425 kb on + strand, within PGA1_c07300at 752.425 kb on + strand, within PGA1_c07300at 752.426 kb on + strand, within PGA1_c07300at 752.434 kb on - strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.491 kb on - strand, within PGA1_c07300at 752.491 kb on - strand, within PGA1_c07300at 752.491 kb on - strand, within PGA1_c07300at 752.513 kb on - strand, within PGA1_c07300at 752.527 kb on + strand, within PGA1_c07300at 752.532 kb on + strand, within PGA1_c07300at 752.592 kb on - strand, within PGA1_c07300at 752.628 kb on + strandat 752.633 kb on + strandat 752.665 kb on - strandat 752.689 kb on + strandat 752.697 kb on - strandat 752.697 kb on - strandat 752.710 kb on + strandat 752.761 kb on + strandat 752.776 kb on - strandat 752.776 kb on - strandat 752.812 kb on - strandat 752.832 kb on + strandat 752.832 kb on + strandat 752.832 kb on + strandat 752.861 kb on + strandat 752.862 kb on + strandat 752.877 kb on - strandat 752.877 kb on - strandat 752.916 kb on + strand, within PGA1_c07310at 752.916 kb on + strand, within PGA1_c07310at 752.918 kb on + strand, within PGA1_c07310at 752.918 kb on + strand, within PGA1_c07310at 752.924 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.979 kb on + strand, within PGA1_c07310at 753.004 kb on - strand, within PGA1_c07310at 753.070 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.080 kb on + strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.122 kb on + strand, within PGA1_c07310at 753.137 kb on - strand, within PGA1_c07310at 753.168 kb on + strand, within PGA1_c07310at 753.168 kb on + strand, within PGA1_c07310at 753.168 kb on + strand, within PGA1_c07310at 753.176 kb on - strand, within PGA1_c07310at 753.176 kb on - strand, within PGA1_c07310at 753.189 kb on + strand, within PGA1_c07310at 753.192 kb on - strand, within PGA1_c07310at 753.210 kb on - strand, within PGA1_c07310at 753.280 kb on - strand, within PGA1_c07310at 753.288 kb on + strand, within PGA1_c07310at 753.316 kb on - strand, within PGA1_c07310at 753.331 kb on + strand, within PGA1_c07310at 753.364 kb on - strand, within PGA1_c07310at 753.404 kb on + strand, within PGA1_c07310at 753.412 kb on - strand, within PGA1_c07310at 753.433 kb on + strand, within PGA1_c07310at 753.441 kb on - strand, within PGA1_c07310at 753.441 kb on - strand, within PGA1_c07310at 753.515 kb on + strand, within PGA1_c07310at 753.515 kb on + strand, within PGA1_c07310at 753.515 kb on + strand, within PGA1_c07310at 753.532 kb on + strand, within PGA1_c07310at 753.540 kb on - strand, within PGA1_c07310at 753.540 kb on - strand, within PGA1_c07310at 753.543 kb on + strand, within PGA1_c07310at 753.551 kb on - strand, within PGA1_c07310at 753.551 kb on - strand, within PGA1_c07310at 753.551 kb on - strand, within PGA1_c07310at 753.592 kb on - strand, within PGA1_c07310at 753.596 kb on + strand, within PGA1_c07310at 753.699 kb on + strand, within PGA1_c07310at 753.699 kb on + strand, within PGA1_c07310at 753.723 kb on + strand, within PGA1_c07310at 753.723 kb on + strand, within PGA1_c07310at 753.833 kb on - strandat 753.866 kb on + strandat 753.891 kb on + strandat 753.899 kb on - strandat 753.904 kb on + strandat 753.912 kb on - strandat 753.976 kb on - strand, within PGA1_c07320at 754.026 kb on + strand, within PGA1_c07320at 754.043 kb on - strand, within PGA1_c07320at 754.231 kb on - strand, within PGA1_c07320at 754.281 kb on - strand, within PGA1_c07320at 754.284 kb on - strand, within PGA1_c07320at 754.295 kb on + strand, within PGA1_c07320at 754.313 kb on - strand, within PGA1_c07320at 754.318 kb on - strand, within PGA1_c07320at 754.355 kb on - strand, within PGA1_c07320at 754.393 kb on - strand, within PGA1_c07320at 754.425 kb on + strand, within PGA1_c07320at 754.447 kb on - strand, within PGA1_c07320at 754.479 kb on + strand, within PGA1_c07320at 754.502 kb on + strand, within PGA1_c07320at 754.546 kb on + strand, within PGA1_c07320at 754.546 kb on + strand, within PGA1_c07320at 754.565 kb on - strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.571 kb on + strand, within PGA1_c07320at 754.574 kb on - strand, within PGA1_c07320at 754.598 kb on - strandat 754.664 kb on - strandat 754.716 kb on - strandat 754.754 kb on + strandat 754.857 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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751,812 + -5.2
751,904 + PGA1_c07300 0.16 -3.1
751,934 - PGA1_c07300 0.19 -3.0
751,939 - PGA1_c07300 0.20 -2.8
751,947 + PGA1_c07300 0.20 -3.0
752,003 - PGA1_c07300 0.26 -2.5
752,040 - PGA1_c07300 0.30 -2.7
752,045 + PGA1_c07300 0.31 -3.1
752,074 + PGA1_c07300 0.34 -2.9
752,074 + PGA1_c07300 0.34 -2.2
752,074 + PGA1_c07300 0.34 -2.8
752,095 - PGA1_c07300 0.36 -3.0
752,117 + PGA1_c07300 0.38 -2.9
752,122 + PGA1_c07300 0.39 -3.5
752,148 + PGA1_c07300 0.42 -2.2
752,156 - PGA1_c07300 0.42 -3.1
752,171 - PGA1_c07300 0.44 -4.4
752,190 + PGA1_c07300 0.46 -2.3
752,239 - PGA1_c07300 0.51 -2.3
752,277 + PGA1_c07300 0.55 -3.2
752,327 - PGA1_c07300 0.60 -3.1
752,390 - PGA1_c07300 0.67 -3.3
752,413 - PGA1_c07300 0.69 -4.0
752,425 + PGA1_c07300 0.71 -3.8
752,425 + PGA1_c07300 0.71 -3.5
752,425 + PGA1_c07300 0.71 -3.2
752,426 + PGA1_c07300 0.71 -4.3
752,434 - PGA1_c07300 0.72 -2.9
752,483 + PGA1_c07300 0.77 -3.2
752,483 + PGA1_c07300 0.77 -3.3
752,483 + PGA1_c07300 0.77 -1.8
752,483 + PGA1_c07300 0.77 -2.6
752,483 + PGA1_c07300 0.77 -2.6
752,483 + PGA1_c07300 0.77 -3.6
752,491 - PGA1_c07300 0.78 -2.8
752,491 - PGA1_c07300 0.78 -2.3
752,491 - PGA1_c07300 0.78 -4.8
752,513 - PGA1_c07300 0.80 -3.4
752,527 + PGA1_c07300 0.81 -4.2
752,532 + PGA1_c07300 0.82 -1.5
752,592 - PGA1_c07300 0.88 -3.6
752,628 + -3.0
752,633 + -3.4
752,665 - -3.4
752,689 + -2.1
752,697 - -1.6
752,697 - -3.3
752,710 + -0.4
752,761 + -2.2
752,776 - -2.9
752,776 - -3.3
752,812 - -2.8
752,832 + -2.8
752,832 + -2.2
752,832 + -1.6
752,861 + -1.5
752,862 + -2.0
752,877 - -2.8
752,877 - -3.1
752,916 + PGA1_c07310 0.13 -1.9
752,916 + PGA1_c07310 0.13 -2.9
752,918 + PGA1_c07310 0.14 -3.4
752,918 + PGA1_c07310 0.14 -3.1
752,924 - PGA1_c07310 0.14 -2.5
752,926 - PGA1_c07310 0.14 -3.5
752,926 - PGA1_c07310 0.14 -1.1
752,926 - PGA1_c07310 0.14 -3.0
752,926 - PGA1_c07310 0.14 -2.9
752,979 + PGA1_c07310 0.19 -1.1
753,004 - PGA1_c07310 0.21 -2.1
753,070 + PGA1_c07310 0.27 -5.3
753,075 + PGA1_c07310 0.28 -2.8
753,075 + PGA1_c07310 0.28 -4.1
753,075 + PGA1_c07310 0.28 -3.7
753,075 + PGA1_c07310 0.28 -2.6
753,075 + PGA1_c07310 0.28 -3.7
753,075 + PGA1_c07310 0.28 -2.6
753,080 + PGA1_c07310 0.28 -3.2
753,083 - PGA1_c07310 0.28 -3.6
753,083 - PGA1_c07310 0.28 -0.3
753,083 - PGA1_c07310 0.28 -3.4
753,083 - PGA1_c07310 0.28 -3.7
753,083 - PGA1_c07310 0.28 -3.2
753,083 - PGA1_c07310 0.28 -2.5
753,083 - PGA1_c07310 0.28 -2.9
753,083 - PGA1_c07310 0.28 -3.0
753,122 + PGA1_c07310 0.32 -3.4
753,137 - PGA1_c07310 0.33 -2.1
753,168 + PGA1_c07310 0.36 -3.0
753,168 + PGA1_c07310 0.36 -3.5
753,168 + PGA1_c07310 0.36 -3.4
753,176 - PGA1_c07310 0.37 -4.2
753,176 - PGA1_c07310 0.37 -2.9
753,189 + PGA1_c07310 0.38 -2.1
753,192 - PGA1_c07310 0.38 -2.3
753,210 - PGA1_c07310 0.40 -1.8
753,280 - PGA1_c07310 0.46 -2.8
753,288 + PGA1_c07310 0.47 -3.5
753,316 - PGA1_c07310 0.49 -3.3
753,331 + PGA1_c07310 0.50 -2.1
753,364 - PGA1_c07310 0.53 -3.7
753,404 + PGA1_c07310 0.57 -2.6
753,412 - PGA1_c07310 0.58 -3.8
753,433 + PGA1_c07310 0.59 -3.0
753,441 - PGA1_c07310 0.60 -1.9
753,441 - PGA1_c07310 0.60 -4.2
753,515 + PGA1_c07310 0.67 -3.4
753,515 + PGA1_c07310 0.67 -4.1
753,515 + PGA1_c07310 0.67 -2.8
753,532 + PGA1_c07310 0.68 -3.1
753,540 - PGA1_c07310 0.69 -2.7
753,540 - PGA1_c07310 0.69 -2.5
753,543 + PGA1_c07310 0.69 -3.3
753,551 - PGA1_c07310 0.70 -2.2
753,551 - PGA1_c07310 0.70 -2.8
753,551 - PGA1_c07310 0.70 -3.5
753,592 - PGA1_c07310 0.74 -2.2
753,596 + PGA1_c07310 0.74 -4.5
753,699 + PGA1_c07310 0.83 -1.5
753,699 + PGA1_c07310 0.83 -3.1
753,723 + PGA1_c07310 0.85 -2.0
753,723 + PGA1_c07310 0.85 -2.1
753,833 - -2.4
753,866 + -1.9
753,891 + -3.7
753,899 - -0.4
753,904 + -2.3
753,912 - -4.3
753,976 - PGA1_c07320 0.11 -2.9
754,026 + PGA1_c07320 0.17 -4.2
754,043 - PGA1_c07320 0.20 -2.2
754,231 - PGA1_c07320 0.44 -2.3
754,281 - PGA1_c07320 0.50 -3.9
754,284 - PGA1_c07320 0.50 -2.4
754,295 + PGA1_c07320 0.52 -2.5
754,313 - PGA1_c07320 0.54 -3.0
754,318 - PGA1_c07320 0.55 -4.2
754,355 - PGA1_c07320 0.59 -2.6
754,393 - PGA1_c07320 0.64 -3.4
754,425 + PGA1_c07320 0.68 -3.7
754,447 - PGA1_c07320 0.71 -2.6
754,479 + PGA1_c07320 0.75 -1.1
754,502 + PGA1_c07320 0.78 -2.5
754,546 + PGA1_c07320 0.84 -3.0
754,546 + PGA1_c07320 0.84 -2.6
754,565 - PGA1_c07320 0.86 -1.9
754,566 + PGA1_c07320 0.86 -4.3
754,566 + PGA1_c07320 0.86 -2.8
754,566 + PGA1_c07320 0.86 -3.5
754,566 + PGA1_c07320 0.86 -2.9
754,571 + PGA1_c07320 0.87 -1.6
754,574 - PGA1_c07320 0.87 -2.4
754,598 - -3.4
754,664 - -2.9
754,716 - -0.6
754,754 + -1.2
754,857 + +0.4

Or see this region's nucleotide sequence