Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p02280

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p02270 and PGA1_262p02280 are separated by 175 nucleotidesPGA1_262p02280 and PGA1_262p02290 are separated by 113 nucleotides PGA1_262p02270: PGA1_262p02270 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 245,428 to 246,360 _262p02270 PGA1_262p02280: PGA1_262p02280 - Phosphoenolpyruvate synthase/pyruvate phosphate dikinase, at 246,536 to 250,561 _262p02280 PGA1_262p02290: PGA1_262p02290 - sugar isomerase-like protein, at 250,675 to 251,583 _262p02290 Position (kb) 246 247 248 249 250 251Strain fitness (log2 ratio) -2 -1 0 1at 245.591 kb on - strand, within PGA1_262p02270at 245.730 kb on + strand, within PGA1_262p02270at 245.730 kb on + strand, within PGA1_262p02270at 245.748 kb on + strand, within PGA1_262p02270at 245.763 kb on + strand, within PGA1_262p02270at 245.766 kb on - strand, within PGA1_262p02270at 245.771 kb on - strand, within PGA1_262p02270at 245.771 kb on - strand, within PGA1_262p02270at 245.827 kb on - strand, within PGA1_262p02270at 245.856 kb on - strand, within PGA1_262p02270at 245.895 kb on - strand, within PGA1_262p02270at 245.908 kb on - strand, within PGA1_262p02270at 245.917 kb on - strand, within PGA1_262p02270at 245.982 kb on - strand, within PGA1_262p02270at 245.985 kb on + strand, within PGA1_262p02270at 245.996 kb on + strand, within PGA1_262p02270at 245.996 kb on + strand, within PGA1_262p02270at 246.004 kb on - strand, within PGA1_262p02270at 246.004 kb on - strand, within PGA1_262p02270at 246.004 kb on - strand, within PGA1_262p02270at 246.092 kb on + strand, within PGA1_262p02270at 246.132 kb on - strand, within PGA1_262p02270at 246.168 kb on - strand, within PGA1_262p02270at 246.168 kb on - strand, within PGA1_262p02270at 246.168 kb on - strand, within PGA1_262p02270at 246.201 kb on - strand, within PGA1_262p02270at 246.231 kb on + strand, within PGA1_262p02270at 246.262 kb on + strand, within PGA1_262p02270at 246.265 kb on + strand, within PGA1_262p02270at 246.273 kb on - strandat 246.273 kb on - strandat 246.278 kb on + strandat 246.321 kb on + strandat 246.321 kb on + strandat 246.327 kb on + strandat 246.332 kb on + strandat 246.339 kb on - strandat 246.340 kb on - strandat 246.367 kb on + strandat 246.367 kb on + strandat 246.367 kb on + strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.399 kb on + strandat 246.567 kb on - strandat 246.578 kb on - strandat 246.598 kb on - strandat 246.636 kb on - strandat 246.647 kb on - strandat 246.680 kb on - strandat 246.768 kb on - strandat 246.775 kb on - strandat 246.802 kb on + strandat 246.869 kb on - strandat 246.869 kb on - strandat 246.886 kb on - strandat 246.922 kb on + strandat 246.922 kb on + strandat 246.930 kb on - strandat 246.985 kb on + strand, within PGA1_262p02280at 247.019 kb on + strand, within PGA1_262p02280at 247.290 kb on + strand, within PGA1_262p02280at 247.318 kb on + strand, within PGA1_262p02280at 247.371 kb on - strand, within PGA1_262p02280at 247.517 kb on - strand, within PGA1_262p02280at 247.566 kb on - strand, within PGA1_262p02280at 247.663 kb on - strand, within PGA1_262p02280at 247.734 kb on - strand, within PGA1_262p02280at 247.754 kb on - strand, within PGA1_262p02280at 247.856 kb on - strand, within PGA1_262p02280at 247.866 kb on - strand, within PGA1_262p02280at 247.926 kb on + strand, within PGA1_262p02280at 248.095 kb on + strand, within PGA1_262p02280at 248.176 kb on - strand, within PGA1_262p02280at 248.213 kb on - strand, within PGA1_262p02280at 248.287 kb on - strand, within PGA1_262p02280at 248.312 kb on - strand, within PGA1_262p02280at 248.352 kb on + strand, within PGA1_262p02280at 248.373 kb on - strand, within PGA1_262p02280at 248.378 kb on - strand, within PGA1_262p02280at 248.474 kb on + strand, within PGA1_262p02280at 248.528 kb on + strand, within PGA1_262p02280at 248.665 kb on - strand, within PGA1_262p02280at 248.665 kb on - strand, within PGA1_262p02280at 248.870 kb on + strand, within PGA1_262p02280at 249.113 kb on + strand, within PGA1_262p02280at 249.179 kb on + strand, within PGA1_262p02280at 249.187 kb on - strand, within PGA1_262p02280at 249.187 kb on - strand, within PGA1_262p02280at 249.189 kb on + strand, within PGA1_262p02280at 249.484 kb on + strand, within PGA1_262p02280at 249.492 kb on - strand, within PGA1_262p02280at 249.514 kb on + strand, within PGA1_262p02280at 249.514 kb on + strand, within PGA1_262p02280at 249.665 kb on + strand, within PGA1_262p02280at 249.803 kb on - strand, within PGA1_262p02280at 249.917 kb on - strand, within PGA1_262p02280at 249.937 kb on + strand, within PGA1_262p02280at 249.945 kb on - strand, within PGA1_262p02280at 249.996 kb on + strand, within PGA1_262p02280at 250.179 kb on - strandat 250.179 kb on - strandat 250.194 kb on - strandat 250.336 kb on + strandat 250.471 kb on - strandat 250.489 kb on + strandat 250.497 kb on - strandat 250.556 kb on + strandat 250.667 kb on - strandat 250.840 kb on - strand, within PGA1_262p02290at 250.857 kb on + strand, within PGA1_262p02290at 251.070 kb on - strand, within PGA1_262p02290at 251.094 kb on - strand, within PGA1_262p02290at 251.094 kb on - strand, within PGA1_262p02290at 251.173 kb on + strand, within PGA1_262p02290at 251.191 kb on - strand, within PGA1_262p02290at 251.205 kb on + strand, within PGA1_262p02290at 251.425 kb on - strand, within PGA1_262p02290at 251.446 kb on + strand, within PGA1_262p02290at 251.478 kb on + strand, within PGA1_262p02290

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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245,591 - PGA1_262p02270 0.17 -0.5
245,730 + PGA1_262p02270 0.32 -0.2
245,730 + PGA1_262p02270 0.32 +0.2
245,748 + PGA1_262p02270 0.34 +0.9
245,763 + PGA1_262p02270 0.36 -0.7
245,766 - PGA1_262p02270 0.36 +0.0
245,771 - PGA1_262p02270 0.37 +0.2
245,771 - PGA1_262p02270 0.37 -0.4
245,827 - PGA1_262p02270 0.43 -0.7
245,856 - PGA1_262p02270 0.46 -0.5
245,895 - PGA1_262p02270 0.50 +1.2
245,908 - PGA1_262p02270 0.51 +0.1
245,917 - PGA1_262p02270 0.52 -0.4
245,982 - PGA1_262p02270 0.59 -0.9
245,985 + PGA1_262p02270 0.60 +0.3
245,996 + PGA1_262p02270 0.61 -0.2
245,996 + PGA1_262p02270 0.61 +0.5
246,004 - PGA1_262p02270 0.62 -0.1
246,004 - PGA1_262p02270 0.62 +1.2
246,004 - PGA1_262p02270 0.62 +0.2
246,092 + PGA1_262p02270 0.71 +0.1
246,132 - PGA1_262p02270 0.75 +0.6
246,168 - PGA1_262p02270 0.79 +0.2
246,168 - PGA1_262p02270 0.79 +0.6
246,168 - PGA1_262p02270 0.79 -0.4
246,201 - PGA1_262p02270 0.83 -0.4
246,231 + PGA1_262p02270 0.86 +0.4
246,262 + PGA1_262p02270 0.89 -0.0
246,265 + PGA1_262p02270 0.90 +0.8
246,273 - +0.1
246,273 - +0.2
246,278 + -0.0
246,321 + -0.4
246,321 + +0.1
246,327 + +0.2
246,332 + -0.6
246,339 - +0.1
246,340 - +1.2
246,367 + -0.6
246,367 + +1.3
246,367 + -1.8
246,375 - +0.1
246,375 - -0.6
246,375 - +0.8
246,375 - +0.5
246,375 - +0.1
246,375 - +0.3
246,375 - +0.6
246,399 + -0.3
246,567 - +0.5
246,578 - +0.1
246,598 - +0.2
246,636 - -0.5
246,647 - -0.3
246,680 - -0.4
246,768 - +0.5
246,775 - +0.1
246,802 + -0.4
246,869 - +0.4
246,869 - -0.3
246,886 - -0.3
246,922 + +0.9
246,922 + -0.6
246,930 - -0.5
246,985 + PGA1_262p02280 0.11 +0.2
247,019 + PGA1_262p02280 0.12 -0.6
247,290 + PGA1_262p02280 0.19 -0.2
247,318 + PGA1_262p02280 0.19 -0.9
247,371 - PGA1_262p02280 0.21 -0.1
247,517 - PGA1_262p02280 0.24 +0.4
247,566 - PGA1_262p02280 0.26 +0.3
247,663 - PGA1_262p02280 0.28 -1.1
247,734 - PGA1_262p02280 0.30 -0.2
247,754 - PGA1_262p02280 0.30 -0.8
247,856 - PGA1_262p02280 0.33 +0.3
247,866 - PGA1_262p02280 0.33 -0.7
247,926 + PGA1_262p02280 0.35 -1.0
248,095 + PGA1_262p02280 0.39 -1.6
248,176 - PGA1_262p02280 0.41 +0.2
248,213 - PGA1_262p02280 0.42 -0.6
248,287 - PGA1_262p02280 0.43 -0.9
248,312 - PGA1_262p02280 0.44 -0.4
248,352 + PGA1_262p02280 0.45 -0.4
248,373 - PGA1_262p02280 0.46 +0.4
248,378 - PGA1_262p02280 0.46 -0.1
248,474 + PGA1_262p02280 0.48 -0.3
248,528 + PGA1_262p02280 0.49 +0.2
248,665 - PGA1_262p02280 0.53 +0.7
248,665 - PGA1_262p02280 0.53 -0.7
248,870 + PGA1_262p02280 0.58 -0.6
249,113 + PGA1_262p02280 0.64 -0.2
249,179 + PGA1_262p02280 0.66 +0.2
249,187 - PGA1_262p02280 0.66 +0.3
249,187 - PGA1_262p02280 0.66 -1.5
249,189 + PGA1_262p02280 0.66 +0.0
249,484 + PGA1_262p02280 0.73 -0.2
249,492 - PGA1_262p02280 0.73 -0.3
249,514 + PGA1_262p02280 0.74 +0.3
249,514 + PGA1_262p02280 0.74 -0.4
249,665 + PGA1_262p02280 0.78 +1.1
249,803 - PGA1_262p02280 0.81 -0.7
249,917 - PGA1_262p02280 0.84 -0.5
249,937 + PGA1_262p02280 0.84 +0.2
249,945 - PGA1_262p02280 0.85 -0.2
249,996 + PGA1_262p02280 0.86 -0.6
250,179 - -0.7
250,179 - +0.3
250,194 - +0.1
250,336 + -2.5
250,471 - -0.5
250,489 + +0.9
250,497 - -0.4
250,556 + -1.0
250,667 - -0.0
250,840 - PGA1_262p02290 0.18 -1.2
250,857 + PGA1_262p02290 0.20 +0.1
251,070 - PGA1_262p02290 0.43 -0.7
251,094 - PGA1_262p02290 0.46 +0.5
251,094 - PGA1_262p02290 0.46 +0.3
251,173 + PGA1_262p02290 0.55 -0.1
251,191 - PGA1_262p02290 0.57 -0.5
251,205 + PGA1_262p02290 0.58 -0.2
251,425 - PGA1_262p02290 0.83 -0.1
251,446 + PGA1_262p02290 0.85 +0.1
251,478 + PGA1_262p02290 0.88 +0.1

Or see this region's nucleotide sequence