Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c33480 and PGA1_c33490 overlap by 14 nucleotides PGA1_c33490 and PGA1_c33500 are separated by 30 nucleotides
PGA1_c33480: PGA1_c33480 - protein PmbA, at 3,508,594 to 3,509,940
_c33480
PGA1_c33490: PGA1_c33490 - inositol-1-monophosphatase SuhB, at 3,509,927 to 3,510,730
_c33490
PGA1_c33500: PGA1_c33500 - 3-deoxy-D-manno-octulosonic-acid transferase-like protein, at 3,510,761 to 3,511,957
_c33500
Position (kb)
3509
3510
3511 Strain fitness (log2 ratio)
-2
-1
0
1 at 3509.316 kb on + strand, within PGA1_c33480 at 3509.910 kb on + strand at 3509.989 kb on + strand at 3510.627 kb on + strand, within PGA1_c33490 at 3510.630 kb on - strand, within PGA1_c33490 at 3510.708 kb on + strand at 3510.729 kb on + strand at 3510.747 kb on + strand at 3510.763 kb on + strand at 3511.431 kb on - strand, within PGA1_c33500 at 3511.518 kb on - strand, within PGA1_c33500 at 3511.518 kb on - strand, within PGA1_c33500 at 3511.520 kb on + strand, within PGA1_c33500 at 3511.535 kb on + strand, within PGA1_c33500 at 3511.545 kb on + strand, within PGA1_c33500 at 3511.574 kb on + strand, within PGA1_c33500 at 3511.584 kb on + strand, within PGA1_c33500 at 3511.584 kb on + strand, within PGA1_c33500 at 3511.602 kb on - strand, within PGA1_c33500 at 3511.665 kb on + strand, within PGA1_c33500 at 3511.695 kb on + strand, within PGA1_c33500 at 3511.703 kb on + strand, within PGA1_c33500 at 3511.703 kb on + strand, within PGA1_c33500 at 3511.713 kb on + strand, within PGA1_c33500
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 3,509,316 + PGA1_c33480 0.54 +0.2 3,509,910 + +0.7 3,509,989 + +0.5 3,510,627 + PGA1_c33490 0.87 -1.0 3,510,630 - PGA1_c33490 0.87 -0.9 3,510,708 + -0.7 3,510,729 + +0.1 3,510,747 + +1.6 3,510,763 + +0.4 3,511,431 - PGA1_c33500 0.56 +0.0 3,511,518 - PGA1_c33500 0.63 -1.3 3,511,518 - PGA1_c33500 0.63 -0.2 3,511,520 + PGA1_c33500 0.63 -0.5 3,511,535 + PGA1_c33500 0.65 -0.3 3,511,545 + PGA1_c33500 0.65 -1.2 3,511,574 + PGA1_c33500 0.68 +0.3 3,511,584 + PGA1_c33500 0.69 +0.2 3,511,584 + PGA1_c33500 0.69 -0.1 3,511,602 - PGA1_c33500 0.70 -0.8 3,511,665 + PGA1_c33500 0.76 -2.2 3,511,695 + PGA1_c33500 0.78 -0.5 3,511,703 + PGA1_c33500 0.79 +1.1 3,511,703 + PGA1_c33500 0.79 -0.6 3,511,713 + PGA1_c33500 0.80 -1.6
Or see this region's nucleotide sequence