Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17570

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17560 and PGA1_c17570 are separated by 12 nucleotidesPGA1_c17570 and PGA1_c17580 are separated by 298 nucleotides PGA1_c17560: PGA1_c17560 - pyruvate dehydrogenase E1 component subunit beta, at 1,840,518 to 1,841,903 _c17560 PGA1_c17570: PGA1_c17570 - dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, at 1,841,916 to 1,843,241 _c17570 PGA1_c17580: PGA1_c17580 - hypothetical protein, at 1,843,540 to 1,845,012 _c17580 Position (kb) 1841 1842 1843 1844Strain fitness (log2 ratio) -1 0 1at 1843.235 kb on + strandat 1843.235 kb on + strandat 1843.267 kb on - strandat 1843.288 kb on + strandat 1843.323 kb on - strandat 1843.334 kb on - strandat 1843.471 kb on - strandat 1843.473 kb on + strandat 1843.481 kb on - strandat 1843.504 kb on - strandat 1843.517 kb on + strandat 1843.568 kb on + strandat 1843.573 kb on + strandat 1843.573 kb on - strandat 1843.658 kb on + strandat 1843.667 kb on - strandat 1843.667 kb on - strandat 1843.667 kb on - strandat 1843.717 kb on + strand, within PGA1_c17580at 1843.761 kb on - strand, within PGA1_c17580at 1843.786 kb on + strand, within PGA1_c17580at 1843.836 kb on + strand, within PGA1_c17580at 1843.839 kb on - strand, within PGA1_c17580at 1843.844 kb on - strand, within PGA1_c17580at 1843.844 kb on - strand, within PGA1_c17580at 1843.844 kb on - strand, within PGA1_c17580at 1843.860 kb on + strand, within PGA1_c17580at 1843.860 kb on + strand, within PGA1_c17580at 1843.860 kb on + strand, within PGA1_c17580at 1843.860 kb on + strand, within PGA1_c17580at 1843.860 kb on + strand, within PGA1_c17580at 1843.868 kb on - strand, within PGA1_c17580at 1843.911 kb on + strand, within PGA1_c17580at 1843.911 kb on + strand, within PGA1_c17580at 1843.918 kb on + strand, within PGA1_c17580at 1843.919 kb on + strand, within PGA1_c17580at 1843.973 kb on - strand, within PGA1_c17580at 1844.098 kb on + strand, within PGA1_c17580at 1844.157 kb on + strand, within PGA1_c17580at 1844.162 kb on + strand, within PGA1_c17580at 1844.170 kb on - strand, within PGA1_c17580at 1844.176 kb on - strand, within PGA1_c17580at 1844.176 kb on - strand, within PGA1_c17580at 1844.186 kb on - strand, within PGA1_c17580at 1844.186 kb on - strand, within PGA1_c17580

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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1,843,235 + -0.2
1,843,235 + -0.2
1,843,267 - +0.2
1,843,288 + +0.2
1,843,323 - +0.9
1,843,334 - +0.1
1,843,471 - -0.6
1,843,473 + -0.2
1,843,481 - -0.3
1,843,504 - -0.5
1,843,517 + -1.1
1,843,568 + -0.8
1,843,573 + -0.6
1,843,573 - -0.1
1,843,658 + +0.5
1,843,667 - +0.6
1,843,667 - -0.4
1,843,667 - +0.0
1,843,717 + PGA1_c17580 0.12 +0.9
1,843,761 - PGA1_c17580 0.15 -0.2
1,843,786 + PGA1_c17580 0.17 -1.0
1,843,836 + PGA1_c17580 0.20 -0.0
1,843,839 - PGA1_c17580 0.20 +0.9
1,843,844 - PGA1_c17580 0.21 +0.4
1,843,844 - PGA1_c17580 0.21 -0.8
1,843,844 - PGA1_c17580 0.21 -1.2
1,843,860 + PGA1_c17580 0.22 +0.2
1,843,860 + PGA1_c17580 0.22 +0.2
1,843,860 + PGA1_c17580 0.22 -0.7
1,843,860 + PGA1_c17580 0.22 -0.6
1,843,860 + PGA1_c17580 0.22 +0.4
1,843,868 - PGA1_c17580 0.22 +0.1
1,843,911 + PGA1_c17580 0.25 +0.1
1,843,911 + PGA1_c17580 0.25 +0.6
1,843,918 + PGA1_c17580 0.26 +0.2
1,843,919 + PGA1_c17580 0.26 +1.3
1,843,973 - PGA1_c17580 0.29 -0.5
1,844,098 + PGA1_c17580 0.38 -0.4
1,844,157 + PGA1_c17580 0.42 +0.6
1,844,162 + PGA1_c17580 0.42 +0.3
1,844,170 - PGA1_c17580 0.43 -0.2
1,844,176 - PGA1_c17580 0.43 -1.6
1,844,176 - PGA1_c17580 0.43 +1.3
1,844,186 - PGA1_c17580 0.44 +0.8
1,844,186 - PGA1_c17580 0.44 -0.1

Or see this region's nucleotide sequence